View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_60 (Length: 250)
Name: NF14034_low_60
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14756107 - 14756349
Alignment:
| Q |
1 |
cctaaatgccagaaaaaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacgcaattgagcaattgaagaga |
100 |
Q |
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| T |
14756107 |
cctaaatgctagaaaaaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagaga |
14756206 |
T |
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| Q |
101 |
tatttgctcatctttataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggt |
200 |
Q |
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| T |
14756207 |
tatttgctcatctttataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggt |
14756306 |
T |
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| Q |
201 |
tttcttttggggtgtttggcaatattggcatgtatattcttcg |
243 |
Q |
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| T |
14756307 |
tttcttttggggtgtttggcaatattggcatgtatattgttcg |
14756349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 17580519 - 17580277
Alignment:
| Q |
1 |
cctaaatgccagaaaaaagaaattatagtgccgtatgacccattttggcaaagactataaggattccaacgtaattgacgcaattgagcaattgaagaga |
100 |
Q |
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| T |
17580519 |
cctaaatgccagaaaaaagaaattataatgccgtatgacccgttttggcaaagactataaggattccaacgtaattgacacaattgagcaattgaagaga |
17580420 |
T |
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| Q |
101 |
tatttgctcatctttataacgtcaatttatcttttgatttcattgtatatatagtgtccctttggcaacaaaaaaccatatgttcggttttattctaggt |
200 |
Q |
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| T |
17580419 |
tatttgctcatctttataacgtcaatttatcttttgatttcagtgtatatatagtgtccctttggcaacaaaaaaccatatgttgagttttattctaggt |
17580320 |
T |
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| Q |
201 |
tttcttttggggtgtttggcaatattggcatgtatattcttcg |
243 |
Q |
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| T |
17580319 |
tttctttcgaggtgtttgacaatattggcatatatattgttcg |
17580277 |
T |
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