View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_64 (Length: 247)
Name: NF14034_low_64
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29873091 - 29872861
Alignment:
| Q |
1 |
actcagtgataatgctactaaagtctttgctttacgtcaaccaataaaaagaatttgcttgattttataaacaaaaatgcatcatatacaaataagaata |
100 |
Q |
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| T |
29873091 |
actcagggataatgctactaaagtcttcgctttacgtcaaccaataaaaagaatttgcttaattttataaacaaaaatgcatcatatacaaataagaata |
29872992 |
T |
|
| Q |
101 |
gcttgcgattaaaattttctttagacctcagccactattaaaaattaggaaaatgctagcaagggcccttaatgcattgtataagcattcaaaagtagta |
200 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29872991 |
gcttgcgattaaaattttgtttagacctcacccactattaaaaattaggaaaatgctagcaagggtccttaatgcattgtataagcattcaaaagtagta |
29872892 |
T |
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| Q |
201 |
ctaatttttatatggaaaattgtgtagttat |
231 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
29872891 |
ctaatttttatatgaaaaattgtgtagttat |
29872861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 14812247 - 14812297
Alignment:
| Q |
147 |
aggaaaatgctagcaagggcccttaatgcattgtataagcattcaaaagta |
197 |
Q |
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| T |
14812247 |
aggaaaatgctaacaagtgcccttacggcattgtttaagcattcaaaagta |
14812297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 33335390 - 33335312
Alignment:
| Q |
150 |
aaaatgctagcaagggcccttaatgcattgtataagcattcaaaagtagtactaatttttatatggaaaattgtgtagttat |
231 |
Q |
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| T |
33335390 |
aaaatgctaacaaatgtccttaatacattgtttaagcatccaaaagtagta---atttttatattgaaaattgtgtagttat |
33335312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 13177725 - 13177808
Alignment:
| Q |
145 |
ttaggaaaatgctagcaagggcccttaatgcattgtataagcattcaaaagtagtactaatttttatatggaaaattgtgtagttat |
231 |
Q |
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|||||||||||||| |||| ||||| | ||||||| ||||||||||||||||| ||| |||||||| | ||||| ||||||||| |
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| T |
13177725 |
ttaggaaaatgctaacaagtgccctcagggcattgtttaagcattcaaaagtag---taacttttatattggaaattatgtagttat |
13177808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 40241977 - 40242031
Alignment:
| Q |
174 |
gcattgtataagcattcaaaagtagtactaatttttatatggaaaattgtgtagttat |
231 |
Q |
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| T |
40241977 |
gcattgtttaaacattcaaaagtagta---atttttacatggaaaattgtgtagttat |
40242031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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