View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_66 (Length: 244)
Name: NF14034_low_66
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 45014318 - 45014089
Alignment:
| Q |
1 |
agtaatccatgaaggtttcatcattgtatgtccatgaatcagtgtaaagaggcatcaaatagttgttgataaagtcattgctacctaaagcaacaacata |
100 |
Q |
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| T |
45014318 |
agtaatccatgaaggtttcatcattgtatgtccatgaatcagtgtaaagaggcatcaaatagttgttgataaagtcattgctacctaaagcaacaacata |
45014219 |
T |
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| Q |
101 |
ttgagcttctctaaaaaacttgtctgcagccctttttccaattttgcttctaattagtttttgtgtcccttgaaacaactcaatttgtttgtctagtgat |
200 |
Q |
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| T |
45014218 |
ttgagcttctctaaaaaacttgtctgcagccctttttccaattttgcttctaatcagtttttgtgtcccttgaaacaactcaatttgtttgtctagtgat |
45014119 |
T |
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| Q |
201 |
aatttttggatctgcatgagagaaataatt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45014118 |
aatttttggatctgcatgagagaaataatt |
45014089 |
T |
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Back To:
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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 11667439 - 11667630
Alignment:
| Q |
1 |
agtaatccatgaaggtttcatcattgtatgtccatgaatcagtgtaaagaggcatcaaatagttgttgataaagtcattgctacctaaagcaacaacata |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
11667439 |
agtaatcgatgaaggtttcatcattgtatgtccatgaatcactataaagaggcatcaagtaattgttgatgaagtcattgctacctaaagcaacaacata |
11667538 |
T |
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| Q |
101 |
ttgagcttctctaaaaaacttgtctgcagccctttttccaattttgcttctaattagtttttgtgtcccttgaaacaactcaatttgtttgt |
192 |
Q |
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| T |
11667539 |
acgtgcttcctgaaaaaacttctctgcttcaaattttccaattttgcttctaattagttcttgtgtcccctcaaacagctcaatttgtttgt |
11667630 |
T |
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