View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_67 (Length: 241)

Name: NF14034_low_67
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_67
NF14034_low_67
[»] chr8 (1 HSPs)
chr8 (93-219)||(28935618-28935745)
[»] scaffold0085 (1 HSPs)
scaffold0085 (93-159)||(14863-14929)
[»] chr4 (1 HSPs)
chr4 (93-159)||(54999877-54999943)
[»] chr3 (2 HSPs)
chr3 (93-159)||(45060453-45060519)
chr3 (93-159)||(45081549-45081615)
[»] chr6 (1 HSPs)
chr6 (115-182)||(6412680-6412747)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 28935745 - 28935618
Alignment:
Q  93 tagtgcgcatgacaagaaggaagagagtattttaacaataattaatttgaa-ccattaatattcatccgaggattgaaattgaatcttctcatcgctcag 191  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||     
T  28935745 tagtgcgcatgacaagaaggaatagagtattttaacaataattaatttgaacccattaatattcatctaaggattgaaattgaatcctctcatcgctcac 28935646  T
Q  192 aataatcactcatctcatttgatacatg 219  Q
    ||||| ||||| ||| ||||||||||||    
T  28935645 aataaccactcctcttatttgatacatg 28935618  T

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Target: scaffold0085 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 14863 - 14929
Alignment:
Q  93 tagtgcgcatgacaagaaggaagagagtattttaacaataattaatttgaaccattaatattcatcc 159  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14863 tagtgcacataactagaagaaagagagtattttaacaataattaatctgaaccattaatattcatcc 14929  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 54999943 - 54999877
Alignment:
Q  93 tagtgcgcatgacaagaaggaagagagtattttaacaataattaatttgaaccattaatattcatcc 159  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  54999943 tagtgcacataactagaagaaagagagtattttaacaataattaatctgaaccattaatattcatcc 54999877  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 45060453 - 45060519
Alignment:
Q  93 tagtgcgcatgacaagaaggaagagagtattttaacaataattaatttgaaccattaatattcatcc 159  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  45060453 tagtgcacataactagaagaaagagagtattttaacaataattaatctgaaccattaatattcatcc 45060519  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 45081615 - 45081549
Alignment:
Q  93 tagtgcgcatgacaagaaggaagagagtattttaacaataattaatttgaaccattaatattcatcc 159  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  45081615 tagtgcacataactagaagaaagagagtattttaacaataattaatctgaaccattaatattcatcc 45081549  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 6412680 - 6412747
Alignment:
Q  115 gagagtattttaacaataattaatttgaaccattaatattcatccgaggattgaaattgaatcttctc 182  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||| || | |||||||| ||||    
T  6412680 gagagtactttaacagtaattaatttgaaccattaatattcatccaagggttaagattgaatcctctc 6412747  T

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