View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_69 (Length: 239)
Name: NF14034_low_69
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 31496409 - 31496616
Alignment:
| Q |
16 |
ataagtcgtcagtaagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctatta |
115 |
Q |
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| T |
31496409 |
ataagtcgtcagtaagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctatta |
31496508 |
T |
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| Q |
116 |
taaatgtacatggcctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattgg |
215 |
Q |
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| T |
31496509 |
taaatgtacatggcctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattgg |
31496608 |
T |
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| Q |
216 |
aagccaac |
223 |
Q |
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|||||||| |
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| T |
31496609 |
aagccaac |
31496616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 40844862 - 40845038
Alignment:
| Q |
42 |
catgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatggcctaattgttttg |
141 |
Q |
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| T |
40844862 |
catgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaagaaggggaaaatcaaagaagctattataaatgtacatggcctaattgttttg |
40844961 |
T |
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| Q |
142 |
tgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattggaagccaac |
223 |
Q |
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| T |
40844962 |
tgaagaaaaaggttgag-----tatagatggagaaattattgagacattatacaaaggtacacataatcattgtaagccaac |
40845038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 31389143 - 31389307
Alignment:
| Q |
30 |
agaaggatgaatcatgatgatgggtataattgg-aaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatgg |
128 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||| ||||||||||||||| || ||| |
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| T |
31389143 |
agaagggtgaatcatgatgatgggtataattggaaaaaaatacgaagagaaaagagtaaaaggaagtgaaaatcagagaagctattataaa--tatgtgg |
31389240 |
T |
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| Q |
129 |
cctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactataca |
195 |
Q |
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| T |
31389241 |
tataattgtgttgtgaagaaaagagttgtgagaacaatagatggcgaaattattgagacaatataca |
31389307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 31461813 - 31461978
Alignment:
| Q |
29 |
aagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatgg |
128 |
Q |
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||||||| ||||||||||||| |||||||||||||||| || |||||| || ||| |||||||||||||||||| ||||||||| ||||||||| | | |
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| T |
31461813 |
aagaagggtgaatcatgatgacaggtataattggaaaaaatacgaagaggaa-tagtaaaaggaagtgaaaatcagagaagctataataaatgtatgtag |
31461911 |
T |
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| Q |
129 |
cctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactataca |
195 |
Q |
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||||||| | |||||||| ||| |||| ||||||||| |||| ||| |||||| |||| |||||| |
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| T |
31461912 |
cctaattttgttgtgaaggaaagagttgtgagaacaattgatgaagagattattgtgacaatataca |
31461978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 8038677 - 8038633
Alignment:
| Q |
173 |
agaagttattgagacactatacaaaggt-acacataatcattgga |
216 |
Q |
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| T |
8038677 |
agaacttattgagacactatagaaaggtaacacataatcattgga |
8038633 |
T |
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