View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_7 (Length: 528)
Name: NF14034_low_7
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 262 - 512
Target Start/End: Complemental strand, 47662312 - 47662062
Alignment:
| Q |
262 |
gatagaatggataggaaatgttannnnnnnnactaaaggaaatgctttgtttggttactaatatatattttttcacttttgaatataacaacgctcgaag |
361 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47662312 |
gatagaatggataggaaatgttattttttt-actaaaggaaatgctttgtttggttactaatatatattttttcacttttgaatataacaacgctcgaag |
47662214 |
T |
|
| Q |
362 |
gagtggtcaatatttatttaccggttaaaaagactctgttccactcacataaccatgac-aagtgttagcactaattagcaaaataagtagagatgacta |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47662213 |
gagtggtcaatatttatttaccggttaaaaagactctgttccattcacataaccatgacaaagtgttagcactaattagcaaaataagtagagatgacta |
47662114 |
T |
|
| Q |
461 |
aaaatgaccatcatcttcacattgtatcttttcctctccttcaacttaatct |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47662113 |
aaaatgaccatcatcttcacattgtatcttttcctttccttcaacttaatct |
47662062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 47662525 - 47662377
Alignment:
| Q |
48 |
ttcttcatatttttgtcactatagttttagttactttatgtgatcttgtataataaacnnnnnnnactcaatatatttagccttgcatacataactttca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
47662525 |
ttcttcatatttttgtcactatagtttttgttactttatgtgatcttgtataataaactttttttactcaatatatttagccttgtatacataactttca |
47662426 |
T |
|
| Q |
148 |
aactttaattgcaccaattcttaactacaatgcatgacattgaatgaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47662425 |
aactttaattgcaccaattcttaactacaatgcatgatattgaatgaaa |
47662377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 11783898 - 11783849
Alignment:
| Q |
138 |
ataactttcaaactttaattgcaccaattcttaactacaatgcatgacat |
187 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||| |||| |
|
|
| T |
11783898 |
ataactttcaaactttaattgcacgaatttctaactagaatgcataacat |
11783849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 6447787 - 6447863
Alignment:
| Q |
113 |
actcaatatatttagccttgcatacataactttcaaactttaattgcaccaattcttaactacaatgcatgacattg |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| |||||||| |||| || |||||| |
|
|
| T |
6447787 |
actcaatatatttagccttgtatacataagtttcaaactttaattacacgaatccttaactaaaatgtataacattg |
6447863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 5010422 - 5010498
Alignment:
| Q |
115 |
tcaatatatttagccttgcatacataactttcaaactttaattgcaccaattcttaactacaatgcatgacattgaa |
191 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||||| ||| ||||| || |||| || |||||||| |
|
|
| T |
5010422 |
tcaatatatttagcattgtacacataactttcaaactttaattgcacgaatccttaaataaaatgaataacattgaa |
5010498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University