View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_70 (Length: 239)
Name: NF14034_low_70
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7967095 - 7967315
Alignment:
| Q |
1 |
atgagttcggagacgacagaacggagtgaatcatcgatgaggatgaagcgagatttgttagattgtgcccagtcgatgtcgtagccgttggagaagaatt |
100 |
Q |
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| T |
7967095 |
atgagttcggaaaggacagaacggagtgaatcatcgatgaggatgaagcgagatttgttagattgtgcccaatcgatgtcatagccgttggagaagaatt |
7967194 |
T |
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| Q |
101 |
tgtcatgtgcgatggtgatgaggacggaggaagtggtggcttgttgacggacacggtggagagtggatttgatggaattgagaagtgtagggttgagaca |
200 |
Q |
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| T |
7967195 |
tgtcgtgtgcgatggtgatgaggacggaggaagtggtggcttgttgacggacacggtggagagtggatttgatggaattgagaagtgtagggttgagaca |
7967294 |
T |
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| Q |
201 |
gtgttcgtcattgtttagtgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7967295 |
gtgttcgtcattgtttagtgt |
7967315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 7973791 - 7973589
Alignment:
| Q |
4 |
agttcggagacgacagaacggagtgaatcatcgatgaggatgaagcgagatttgttagattgtgcccagtcgatgtcgtagccgttggagaagaatttgt |
103 |
Q |
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| T |
7973791 |
agttcggagacgacggaacgaaggagatcgtcgatgaggatgatgcgtgatttgttgtcttgtgcccagtcgatgtcgtaaccgttggagaagaattttc |
7973692 |
T |
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| Q |
104 |
catgtgcgatggtgatgaggacggaggaagtggtggcttgttgacggacacggtggagagtggatttgatggaattgagaagtgtagggttgagacagtg |
203 |
Q |
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| T |
7973691 |
cgtgtgcggtggtgatgaggacggaggaggtggtggcttgttgacggacacggtgaagggcggatttgattgaattgagaagtgtggggttgagacggtg |
7973592 |
T |
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| Q |
204 |
ttc |
206 |
Q |
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||| |
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| T |
7973591 |
ttc |
7973589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 55819603 - 55819722
Alignment:
| Q |
34 |
tcgatgaggatgaagcgagatttgttagattgtgcccagtcgatgtcgtagccgttggagaagaatttgtca-tgtgcgatggtgatgaggacggaggaa |
132 |
Q |
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||||||||||| | |||||| ||||| |||||||||||||||||| || | || ||||||||| || | |||| | ||||||||||| ||||||| |
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| T |
55819603 |
tcgatgaggatcatgcgagagttgttgttttgtgcccagtcgatgtcataaca-ttagagaagaatctgcccgtgtgtggtggtgatgagggcggaggag |
55819701 |
T |
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| Q |
133 |
gtggtggcttgttgacggaca |
153 |
Q |
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| T |
55819702 |
gtggtggcttgttgacggaca |
55819722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 1068802 - 1068647
Alignment:
| Q |
4 |
agttcggagacgacagaacggagtgaatcatcgatgaggatgaagcgagatttgttagattgtgcccagtcgatgtcgtagccgttggagaagaat-ttg |
102 |
Q |
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|||| |||||||| |||||||| ||| ||||||||||| | |||||| ||||| || |||||| |||||||| |||| || ||||||||| || |
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| T |
1068802 |
agtttggagacgatggaacggaggagatcgtcgatgaggatcatgcgagagttgttgttttatgcccaatcgatgtcatagca-ttagagaagaatcttc |
1068704 |
T |
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| Q |
103 |
tcatgtgcgatggtgatgaggacggaggaagtggtggcttgttgacggacacggtgg |
159 |
Q |
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| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
1068703 |
ccgtgtgtggtggtgatgagggcggaggaggtggtggcttgttgacggacatggtgg |
1068647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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