View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_75 (Length: 227)

Name: NF14034_low_75
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_75
NF14034_low_75
[»] chr6 (2 HSPs)
chr6 (18-214)||(15668411-15668590)
chr6 (74-212)||(26332526-26332664)
[»] chr4 (9 HSPs)
chr4 (74-205)||(13091716-13091847)
chr4 (74-205)||(44743649-44743780)
chr4 (74-214)||(22591728-22591868)
chr4 (110-214)||(13091610-13091714)
chr4 (37-76)||(13091885-13091924)
chr4 (37-76)||(44743818-44743857)
chr4 (37-76)||(10154585-10154624)
chr4 (37-76)||(22591906-22591945)
chr4 (122-168)||(23628382-23628428)
[»] chr3 (2 HSPs)
chr3 (74-157)||(36332072-36332155)
chr3 (37-76)||(36332193-36332232)
[»] chr1 (3 HSPs)
chr1 (74-157)||(38835441-38835524)
chr1 (37-76)||(32605340-32605379)
chr1 (37-76)||(38835559-38835598)
[»] scaffold0438 (2 HSPs)
scaffold0438 (74-145)||(2887-2958)
scaffold0438 (37-76)||(2996-3035)
[»] chr7 (3 HSPs)
chr7 (78-151)||(10094926-10094999)
chr7 (37-76)||(9789636-9789675)
chr7 (37-76)||(10094269-10094308)
[»] chr8 (1 HSPs)
chr8 (37-76)||(15587992-15588031)
[»] chr2 (1 HSPs)
chr2 (37-76)||(21022399-21022438)
[»] scaffold0198 (1 HSPs)
scaffold0198 (122-168)||(15726-15772)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 15668411 - 15668590
Alignment:
Q  18 tttattacaaagagtttataaatttataaattattatataaaacattatcataaattaacacatcataaatttgaacgatttttattttccaacaactta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||| ||||| |||||||||    
T  15668411 tttattacaaagagtttataaatttataaattattatataaaacattatcataaattaac-----------------gatttttgttttcaaacaactta 15668493  T
Q  118 gtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaattatatgtactcaaatcttcattaatgtttctttcttcttctc 214  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  15668494 gtggctatttaatttctagctctatccatatagctcccatcttgtactcttaaattatatgtacttgaatcttcattaatgtttctttcttcttctc 15668590  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 26332526 - 26332664
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaatt 173  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  26332526 taacacatcataaacttgaacgatttttgtcttccaacaacttagtggctatttgatttctagctctatccatgtagctcacatcttgtactcttaaatt 26332625  T
Q  174 atatgtactcaaatcttcattaatgtttctttcttcttc 212  Q
     |||| |||| |||||||| |||||||||||||||||||    
T  26332626 gtatgaactcgaatcttcagtaatgtttctttcttcttc 26332664  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 13091847 - 13091716
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaatt 173  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  13091847 taacacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaatt 13091748  T
Q  174 atatgtactcaaatcttcattaatgtttcttt 205  Q
    || || |||| |||||||||||||||||||||    
T  13091747 atttgaactcgaatcttcattaatgtttcttt 13091716  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 44743780 - 44743649
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaatt 173  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  44743780 taacacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaatt 44743681  T
Q  174 atatgtactcaaatcttcattaatgtttcttt 205  Q
    || || |||| |||||||||||||||||||||    
T  44743680 atttgaactcgaatcttcattaatgtttcttt 44743649  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 22591868 - 22591728
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaatt 173  Q
    |||||||| ||||| ||||| ||||||  ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  22591868 taacacattataaacttgaatgattttcgttttccaacaacttagtggctatttgatttctagctctatccatgtggctcccatcttgtactcttaaatt 22591769  T
Q  174 atatgtactcaaatcttcattaatgtttctttcttcttctc 214  Q
    ||||| |||  |||||||| |  ||||||||||||||||||    
T  22591768 atatgaacttgaatcttcagtggtgtttctttcttcttctc 22591728  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 13091714 - 13091610
Alignment:
Q  110 acaacttagtggctattttatttctaactctatccatgtagctcccatcttgtactcttaaattatatgtactcaaatcttcattaatgtttctttcttc 209  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  13091714 acaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatttgaactcgaatcttcattaatgtttctttcttc 13091615  T
Q  210 ttctc 214  Q
    |||||    
T  13091614 ttctc 13091610  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 13091924 - 13091885
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13091924 aaatttataaattattatataaaacattatcataaattaa 13091885  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 44743857 - 44743818
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44743857 aaatttataaattattatataaaacattatcataaattaa 44743818  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 10154624 - 10154585
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  10154624 aaatttataaattattatgtaaaacattatcataaattaa 10154585  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 22591945 - 22591906
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  22591945 aaatttataaattattatataaaactttatcataaattaa 22591906  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 23628428 - 23628382
Alignment:
Q  122 ctattttatttctaactctatccatgtagctcccatcttgtactctt 168  Q
    |||||| |||||||||||||| ||||||||  |||||||||||||||    
T  23628428 ctatttgatttctaactctattcatgtagcctccatcttgtactctt 23628382  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 36332155 - 36332072
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccat 157  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||    
T  36332155 taacacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgttgctcccat 36332072  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 36332232 - 36332193
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36332232 aaatttataaattattatataaaacattatcataaattaa 36332193  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 38835524 - 38835441
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagctcccat 157  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||    
T  38835524 taacacatcataaacttgaacgatttttgttttccaacaacttagtggctatttgatttctagctctgtccatgtagcttccat 38835441  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 32605379 - 32605340
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32605379 aaatttataaattattatgtaaaacattatcataaattaa 32605340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 38835598 - 38835559
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  38835598 aaatgtataaattattatataaaacattatcataaattaa 38835559  T

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Target: scaffold0438 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2958 - 2887
Alignment:
Q  74 taacacatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatcca 145  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  2958 taacacatcataaacttgaacgatttttgttttccaacaacttagtgactatttgatttctagctctatcca 2887  T

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Target: scaffold0438; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 3035 - 2996
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  3035 aaatttataaattattatataacacattatcataaattaa 2996  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 10094926 - 10094999
Alignment:
Q  78 acatcataaatttgaacgatttttattttccaacaacttagtggctattttatttctaactctatccatgtagc 151  Q
    |||||| ||| ||||||||||||| ||||||||||||||| |||||||||  ||| || ||||||| |||||||    
T  10094926 acatcacaaacttgaacgatttttgttttccaacaacttaatggctatttggtttttacctctatcaatgtagc 10094999  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 9789636 - 9789675
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  9789636 aaatttataaattattatagaaaacattatcataaattaa 9789675  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 10094269 - 10094308
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10094269 aaattcataaattattatataaaacattatcataaattaa 10094308  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 15587992 - 15588031
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  15587992 aaatttataaattattatgtaaaatattatcataaattaa 15588031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 21022399 - 21022438
Alignment:
Q  37 aaatttataaattattatataaaacattatcataaattaa 76  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  21022399 aaatttataaattattatgtaaaacattattataaattaa 21022438  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 15726 - 15772
Alignment:
Q  122 ctattttatttctaactctatccatgtagctcccatcttgtactctt 168  Q
    |||||| |||||||||||||| ||||||||  |||||||||||||||    
T  15726 ctatttgatttctaactctattcatgtagcctccatcttgtactctt 15772  T

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