View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_8 (Length: 520)
Name: NF14034_low_8
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 9648484 - 9647990
Alignment:
| Q |
11 |
atgaaatacaccgtgtgtggaaattcttttcgaactaagcccgaggtgtctcttacaatatcaaagctgtcaaaatacacaaacgaaacagaattcatga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648484 |
atgaaatacaccgtgtgtggaaattcttttcgaactaagcccgaggtgtctcttacaatatcaaagctgtcaaaatacacaaacgaaacagaattcatga |
9648385 |
T |
|
| Q |
111 |
catgaattccacatataccaagcagaatttaagcaaacactaaaaaatgtggcatagattctcctcttgaattgcaatgctaatgccaaaaggaacttaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648384 |
catgaattccacatataccaagcagaatttaagcaaacactaaaaaatgtggcgtagattctcctcttgaattgcaatgctaatgccaaaaggaacttaa |
9648285 |
T |
|
| Q |
211 |
caactgtatggaaattacctaagacaaggccatccaatatgaaaagcatgaagagagttgtaagcagaaggatcacactgaagttcttcatcttcttcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648284 |
caactgtatggaaattacctaagacaaggccatccaatatgaaaagcatgaagagagttgtaagcagaaggatcacactgaagttcttcatcttcttcca |
9648185 |
T |
|
| Q |
311 |
acctgtccacaccaggttgccacactttaaccggaagctgtggcactgaagaagatgattcgcttcgtttcttggagtcccggatataaattttgcacaa |
410 |
Q |
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| T |
9648184 |
acctgtccacaccaggttgccacactttaactggaagctgtggcactgaagaagatgattcgcttcgtttcttggagtcccggatataaattttgcacaa |
9648085 |
T |
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| Q |
411 |
tgccacaaaaattagatgtgttcacaatgaaagaaataaaataaataatgaagtggttgaattgaatgaagcacaaaataatacaccttggtctt |
505 |
Q |
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| T |
9648084 |
tgccacaaaaattagacgtgttcacaatgaaagaaataaaataaataatgaagtggttgaattgaatgaagcaaacaataatacaccttggtctt |
9647990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 34739274 - 34739403
Alignment:
| Q |
225 |
ttacctaagacaaggccatccaatatgaaaagcatgaagagagttgtaagcagaaggatcacactgaagttcttcatcttcttccaacctgtccacacca |
324 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |
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| T |
34739274 |
ttacctaaggcaaggccatccaatatgaaaagcatgaagagagttgtaagcagaaggatcacactgaagctcttcatcttcttccaacttatccacacca |
34739373 |
T |
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| Q |
325 |
ggttgccacactttaaccggaagctgtggc |
354 |
Q |
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| T |
34739374 |
ggttgccacacttttaccggaacctgtggc |
34739403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 34738825 - 34738928
Alignment:
| Q |
11 |
atgaaatacaccgtgtgtggaaattcttttcgaactaagcccgaggtgtctcttacaatatcaaagctgtcaaaatacacaaacgaaacagaattcatga |
110 |
Q |
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||||||||||| ||||||||||||||| |||||||||| ||| |||||| | || |||||| ||||||||||||| | ||||| ||| | || |||||| |
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| T |
34738825 |
atgaaatacactgtgtgtggaaattctgttcgaactaaacccatggtgtcacgtaaaatatcgaagctgtcaaaatccccaaacaaaaaataaatcatga |
34738924 |
T |
|
| Q |
111 |
catg |
114 |
Q |
| |
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|||| |
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|
| T |
34738925 |
catg |
34738928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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