View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_84 (Length: 215)

Name: NF14034_low_84
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_84
NF14034_low_84
[»] chr7 (5 HSPs)
chr7 (33-123)||(46524844-46524934)
chr7 (122-189)||(11016953-11017020)
chr7 (122-189)||(4290629-4290696)
chr7 (37-121)||(46532395-46532473)
chr7 (124-186)||(41945844-41945906)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-189)||(49691-49757)
[»] chr8 (4 HSPs)
chr8 (123-189)||(5033245-5033311)
chr8 (124-189)||(33841580-33841645)
chr8 (124-189)||(35440958-35441023)
chr8 (125-186)||(1880229-1880289)
[»] chr5 (6 HSPs)
chr5 (124-189)||(16971228-16971293)
chr5 (125-189)||(13312254-13312318)
chr5 (125-189)||(2953274-2953338)
chr5 (126-189)||(3899923-3899986)
chr5 (125-189)||(291181-291245)
chr5 (125-189)||(12913793-12913857)
[»] chr4 (7 HSPs)
chr4 (117-189)||(42375094-42375166)
chr4 (125-189)||(51265529-51265593)
chr4 (125-189)||(47661926-47661990)
chr4 (125-187)||(30709986-30710048)
chr4 (131-192)||(5048881-5048942)
chr4 (125-186)||(35682156-35682217)
chr4 (125-161)||(55516963-55516999)
[»] chr1 (5 HSPs)
chr1 (125-189)||(48993907-48993971)
chr1 (126-189)||(32540832-32540895)
chr1 (123-189)||(29179585-29179651)
chr1 (124-161)||(44183438-44183475)
chr1 (121-189)||(5995453-5995521)
[»] chr2 (4 HSPs)
chr2 (123-189)||(38933671-38933737)
chr2 (125-189)||(16514508-16514572)
chr2 (121-189)||(32545872-32545940)
chr2 (122-186)||(35204154-35204218)
[»] chr3 (3 HSPs)
chr3 (125-186)||(30734489-30734550)
chr3 (131-189)||(30580752-30580810)
chr3 (125-189)||(45103099-45103163)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 46524844 - 46524934
Alignment:
Q  33 gggctcagagcaactgtgaagaaatttcaatattttgatgctgttgatacttgatgatactttataatggacaaatgagccgacataaata 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46524844 gggctcagagcaactgtgaagaaatttcaatattttgatgctgttgatacttgatgatactttataatggacaaatgagccgacataaata 46524934  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 11017020 - 11016953
Alignment:
Q  122 tacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||||||||| | || |||||||||| | ||||| |||||||| ||||||||||    
T  11017020 tacgggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 11016953  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 4290696 - 4290629
Alignment:
Q  122 tacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||||||||| | || |||||||||| | |||||  ||||||| ||||||||||    
T  4290696 tacgggtagcacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaa 4290629  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 46532395 - 46532473
Alignment:
Q  37 tcagagcaactgtgaagaaattt-caatattttgatgctgttgatacttgatgatactttataatggacaaatgagccgacataaa 121  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||       ||||||||||||| |||||||||| ||||||||||    
T  46532395 tcagagcaactatgaagaaattttcaatattttgatgcggttga-------tgatactttataacggacaaatgaaccgacataaa 46532473  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 41945844 - 41945906
Alignment:
Q  124 cgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtca 186  Q
    |||||||||||| | ||||||| ||||  ||||||||||| ||||||  ||||||||||||||    
T  41945844 cgggtagcacttagatgacatagaattgagtgacattgatgacattagtcaatcataatgtca 41945906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 49691 - 49757
Alignment:
Q  123 acgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||||| | || |||||||||||| ||||| |||||||| ||||||||||    
T  49691 acgggtagcacttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaa 49757  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 5033311 - 5033245
Alignment:
Q  123 acgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||||| | || |||||||||| | ||||| |||||||| ||||||||||    
T  5033311 acgggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 5033245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 33841580 - 33841645
Alignment:
Q  124 cgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||||||| | || |||||||||| | ||||| |||||||| | ||||||||    
T  33841580 cgggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaa 33841645  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 35440958 - 35441023
Alignment:
Q  124 cgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||| || | || |||||||||| | ||||| |||||||| ||||||||||    
T  35440958 cgggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 35441023  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 1880229 - 1880289
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtca 186  Q
    ||||||||||||||||||||| |||| ||||||| || | ||||| |||||||| |||||||    
T  1880229 gggtagcacttgggtgacatagaatt-ggtgacactggtgacattgaccaatcacaatgtca 1880289  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 16971293 - 16971228
Alignment:
Q  124 cgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||||||| | || |||||||||| | ||||| |||||||| ||||||||||    
T  16971293 cgggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 16971228  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 13312254 - 13312318
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||| ||||||||| | ||||||||||||||| ||||| | |||||| ||||||||||    
T  13312254 gggtagcacttaggtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaa 13312318  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 2953338 - 2953274
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||| | || |||||||||| | |||||  ||||||| ||||||||||    
T  2953338 gggtagcacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaa 2953274  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 3899986 - 3899923
Alignment:
Q  126 ggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||| || | || |||||||||| | ||||| |||||||| ||||||||||    
T  3899986 ggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 3899923  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 291245 - 291181
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||| ||| | || |||||||||| | ||||| | |||||| ||||||||||    
T  291245 gggtagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaa 291181  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 12913793 - 12913857
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||| |||||||||| ||  ||||||||| | |||||  ||||||| ||||||||||    
T  12913793 gggtagcacttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaa 12913857  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 42375166 - 42375094
Alignment:
Q  117 ataaatacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||| ||||||||||||||||||||| | || |||||||||| | ||||| | |||||| ||||||||||    
T  42375166 ataaataagggtagcacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaa 42375094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 51265593 - 51265529
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||| || | || |||||||||| | ||||| |||||||||||||||||||    
T  51265593 gggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaa 51265529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 47661990 - 47661926
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||| |||||||||||| | || |||||||||| | ||||| |||||||| ||||||||||    
T  47661990 gggtagcatttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 47661926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 30710048 - 30709986
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcac 187  Q
    |||| |||||||||||||||| | ||||||||||||| | |||||  ||||||| ||||||||    
T  30710048 gggtggcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcac 30709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 5048942 - 5048881
Alignment:
Q  131 cacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaacaa 192  Q
    ||||||| ||||||| | || |||||||||||| |||||   ||||||||||||||||||||    
T  5048942 cacttggatgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaacaa 5048881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 35682156 - 35682217
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtca 186  Q
    ||||||||||||||||||||| | |||||||| |||| | |||||  ||||||| |||||||    
T  35682156 gggtagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtca 35682217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 55516999 - 55516963
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattg 161  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  55516999 gggtagcaattgggtgacatataatttggtgacattg 55516963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 48993907 - 48993971
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||| | || |||||||||| | ||||| |||||||| ||||||||||    
T  48993907 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaa 48993971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 32540895 - 32540832
Alignment:
Q  126 ggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||||||||||||||||| |||| | |||||||| | ||||| |||||||| ||||| ||||    
T  32540895 ggtagcacttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaa 32540832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 29179585 - 29179651
Alignment:
Q  123 acgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||| ||||||| | || |||||||||| | ||| | |||||||| ||||||||||    
T  29179585 acgggtagcacttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaa 29179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 44183475 - 44183438
Alignment:
Q  124 cgggtagcacttgggtgacatataattaggtgacattg 161  Q
    |||||||||||||||||||||| | |||||||||||||    
T  44183475 cgggtagcacttgggtgacatagagttaggtgacattg 44183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 5995521 - 5995453
Alignment:
Q  121 atacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||| ||||||||||||||| | || | |||||||| | ||||| |||||||| |||| |||||    
T  5995521 atacgggtaacacttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaa 5995453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 38933737 - 38933671
Alignment:
Q  123 acgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||||| | || |||||||||| | || ||  ||||||||||||||||||    
T  38933737 acgggtagcacttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaa 38933671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 16514572 - 16514508
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||| | || ||||| |||| | ||||| |||||||| ||||||||||    
T  16514572 gggtagcacttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaa 16514508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 32545940 - 32545872
Alignment:
Q  121 atacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||| |||||||||||||||||| | ||  ||||||||| | |||||  ||||||||||||||||||    
T  32545940 atacggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaa 32545872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 35204218 - 35204154
Alignment:
Q  122 tacgggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtca 186  Q
    |||||||||||||||||||||||| ||||  | ||||||||| |||||   |||| |||||||||    
T  35204218 tacgggtagcacttgggtgacatagaattttgagacattgatgacattggtcaattataatgtca 35204154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 30734550 - 30734489
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtca 186  Q
    ||||||||||||||||||||| | ||||||||||||| | |||||  ||||||| |||||||    
T  30734550 gggtagcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtca 30734489  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 30580752 - 30580810
Alignment:
Q  131 cacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    |||||| |||||||| |||| |||||||||| | | ||| |||||||||||||||||||    
T  30580752 cacttgagtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaa 30580810  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 45103099 - 45103163
Alignment:
Q  125 gggtagcacttgggtgacatataattaggtgacattgataacattaaccaatcataatgtcacaa 189  Q
    ||||||||||||||||||||| | || |||||||||| | | ||| | |||||| ||||||||||    
T  45103099 gggtagcacttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaa 45103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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