View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_1 (Length: 850)
Name: NF14035_high_1
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 444 - 833
Target Start/End: Original strand, 1703338 - 1703727
Alignment:
| Q |
444 |
gaaggaactaaaatacatattttaacatagaatgccataataatttcattacacaaaaactcaaacacttcttattaaaacattcttaataaaccaaagc |
543 |
Q |
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| T |
1703338 |
gaaggaactaacatacatattttaacatagaatgccataataatttcattacacaaaaactcaaacacttcttattaaaacattcttaacaaaccaaagc |
1703437 |
T |
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| Q |
544 |
agtttaaaaccctaattaggacaacttccataaaacaaaagcaaagtactcaactacaaaataaggaaaatgattatgcacccttaaatcaaacctacac |
643 |
Q |
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| T |
1703438 |
agtttaaaaccctaattaggaaaatttccattaaacaaaagcaaagcactcaactacaaaataaggaaaatgattatgcacccttaaatcaaacctacac |
1703537 |
T |
|
| Q |
644 |
aatgttctctgaaggtggcttgtctgttgttaattctgaagttggcttgtctgctgttgtctctgaagttggtttgtatgctgatcttagaaagttatat |
743 |
Q |
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| T |
1703538 |
aatgttctctgaagttggcttgtctgttgttaattctgaagttggcttgtctgctattgtctctgaagttggtttgtatgctgatcttagaaagttatag |
1703637 |
T |
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| Q |
744 |
gcaagtgctccagctatggctccaataattggaccaactatatatatccacaatcctttgtaaatatgtatcacaattgcaggaccaata |
833 |
Q |
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| T |
1703638 |
gcaagtgctccagctatggctccaataattggaccaactatatatatccacaatcctttgtaaatatgtatcacaattgcaggaccaata |
1703727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 1702916 - 1703213
Alignment:
| Q |
24 |
ttgaattgagttaatagacttttcttcgatacatatattgcagaacctcccgaacctggtattaccttgggacattgttatttgtttcctagctcttggc |
123 |
Q |
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| T |
1702916 |
ttgaattgagttaatagacttttcttctatacatatattgcagaacctcctgaacctggtattaccttgggacattgttatttgtttcctagctcttggc |
1703015 |
T |
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| Q |
124 |
atctatacatatcatgcgtgtttagctagtcccataataaaattttctcttgtaataaaagaaccaccaaaatactaatttaaatttgtttttaatagtc |
223 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1703016 |
atctatacatatcatgtgtgtttagctattcccttaataaaattttctcttgtaataaaagaaccaccaaaatactaatttaaatttgtttttaatagtc |
1703115 |
T |
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| Q |
224 |
tcgtgtacattcaatttatgaataatatatttgctttactaaaatattatttgttatataaccagacaaatttttacttaaaattaattaatagtgag |
321 |
Q |
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| T |
1703116 |
tcgtgtacattcaatttttgaatgatatatttgttttactaaaatattatttgttatataaccagacaaatttttacttaaatttaattaatagtgag |
1703213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 726 - 833
Target Start/End: Complemental strand, 34020006 - 34019899
Alignment:
| Q |
726 |
gatcttagaaagttatatgcaagtgctccagctatggctccaataattggaccaactatatatatccacaatcctttgtaaatatgtatcacaattgcag |
825 |
Q |
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||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||| | ||||||||| | ||||||||||| ||||| | || ||||| |
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| T |
34020006 |
gatctaagaaagttatatgcaattgctccagctatagctccaacaattggaccaaccacatatatccatagtcctttgtaaacatgtactataagtgcag |
34019907 |
T |
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| Q |
826 |
gaccaata |
833 |
Q |
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| T |
34019906 |
gaccaata |
34019899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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