View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_12 (Length: 363)
Name: NF14035_high_12
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 6128642 - 6128991
Alignment:
| Q |
7 |
gtttcccaacaactaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaa |
106 |
Q |
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| T |
6128642 |
gtttcccaacaactaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaa |
6128741 |
T |
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| Q |
107 |
aatttactaacaataaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatc |
206 |
Q |
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| T |
6128742 |
aatttactaacaataaggaaataaccactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctctggcaaaaaggatatcaaatttcatc |
6128841 |
T |
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| Q |
207 |
aggtatattgaaattttcctagcatttatttttgttttaaaagagttagttggaaaaatttctaaatacaagagaattaggaaattcttgatttgaatac |
306 |
Q |
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| T |
6128842 |
aggtatattgaaattttcctagcatttatttttgtttt-aaagagttagttggaaaaatttctaaatac-agagaattaggaaattcttgatttgaatac |
6128939 |
T |
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| Q |
307 |
gctttaacgtacttcttccgtttcacaatacatatcgcttttgaagaataat |
358 |
Q |
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| T |
6128940 |
gctttaatgtacttcttccgtttcacaatacatgtcgcttttgaagaataat |
6128991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 34451153 - 34450965
Alignment:
| Q |
20 |
taaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaa |
119 |
Q |
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| T |
34451153 |
taaacttcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaa |
34451054 |
T |
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| Q |
120 |
taaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatcag |
208 |
Q |
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| T |
34451053 |
taaggaaataaccacaaaagaaggttcccttcacttccttgcattagaatttcgtttgcttaggaaaaaaggatatcacatttcatcag |
34450965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 34487944 - 34487778
Alignment:
| Q |
22 |
aacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaacaata |
121 |
Q |
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| T |
34487944 |
aacttcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaagcattggaacaaatccacaatacttttaccaacaata |
34487845 |
T |
|
| Q |
122 |
aggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaa |
188 |
Q |
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| T |
34487844 |
aggaaataaccacaaaagaaggctcccttcacttccttgcattagcatttcgtttgcttaggcaaaa |
34487778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 34461927 - 34461733
Alignment:
| Q |
18 |
actaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaac |
117 |
Q |
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| T |
34461927 |
actaaacctcattgactcattgcaacgtttgggaatatcttatcaatttgaacatgaaattgatgaagcgttagaacaaattcacaacaattttagtgac |
34461828 |
T |
|
| Q |
118 |
aataaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatcaggtat |
212 |
Q |
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| T |
34461827 |
aataaggaaatgacctcagaagaaggtgaccttcactttcttgcgttagtatttcgtttgcttaggcaaaaaggacatcacatgtcttcaggtat |
34461733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 34475694 - 34475534
Alignment:
| Q |
19 |
ctaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaagcattaaaacaaatctacacaaaatttactaaca |
118 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| | ||||| |||| |
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| T |
34475694 |
ctaaacttcattgattcattgcaacgtttgggaatatcttatcattttgaacttgaaattgatgaagcattggaacaaatccacaatacttttaccaaca |
34475595 |
T |
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| Q |
119 |
ataaggaaataactactaatgaaggtggccttcactttcttgcgttagcatttcgtttgct |
179 |
Q |
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| T |
34475594 |
ataaggaaataaccacagaagaaggttcccttcacttccttgcattagcatttcgtttgct |
34475534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 1595312 - 1595245
Alignment:
| Q |
17 |
aactaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaattgatgaa |
84 |
Q |
| |
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|||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1595312 |
aactaaacatcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaattgatgaa |
1595245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 1595193 - 1595126
Alignment:
| Q |
139 |
gaaggtggccttcactttcttgcgttagcatttcgtttgctcaggcaaaaaggatatcaaatttcatc |
206 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
1595193 |
gaaggtggccttcacttttgtgcattagcatttcgtttgcttaggcaaaaaggacatcacatttcatc |
1595126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 26628809 - 26628858
Alignment:
| Q |
309 |
tttaacgtacttcttccgtttcacaatacatatcgcttttgaagaataat |
358 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| |||||||| |
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| T |
26628809 |
tttaacgtactttctccgtttcacaatacatgttgcttttggagaataat |
26628858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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