View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_14 (Length: 337)
Name: NF14035_high_14
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 52953533 - 52953230
Alignment:
| Q |
20 |
gcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaattccaatcatcttgacaatttccaaacactttgtaattca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52953533 |
gcaaaacaccttcttctaggtaaaggctcacaccttttcgaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattca |
52953434 |
T |
|
| Q |
120 |
tatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagttt |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953433 |
tatactgagacaacaaatcagaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagttt |
52953334 |
T |
|
| Q |
220 |
atgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953333 |
atgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttc |
52953234 |
T |
|
| Q |
320 |
tttt |
323 |
Q |
| |
|
|||| |
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| T |
52953233 |
tttt |
52953230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 31903993 - 31904296
Alignment:
| Q |
20 |
gcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaattccaatcatcttgacaatttccaaacactttgtaattca |
119 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
31903993 |
gcaaaacaccttcttcttggtaaaggctcacaccctttcaaaatcaatttctgagcataactccaatcatcttgacaatttccaaatactttgtaattca |
31904092 |
T |
|
| Q |
120 |
tatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagttt |
219 |
Q |
| |
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||||||| |||| |||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
31904093 |
tatactgggacatcaaatcagaagatttctcacaagaatagcccatagatgaaaccatctcagtcattccagttttggaatctttacccaaaggaagttt |
31904192 |
T |
|
| Q |
220 |
atgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttc |
319 |
Q |
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||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
31904193 |
atgagggttaagaaaaagtttgagctcttttgcaatgttgggtcttgaaagatcaaaactttcatagccaagaagctgtttttctatctgggctagtttc |
31904292 |
T |
|
| Q |
320 |
tttt |
323 |
Q |
| |
|
|||| |
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| T |
31904293 |
tttt |
31904296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 7760414 - 7760107
Alignment:
| Q |
16 |
ttttgcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaattccaatcatcttgacaatttccaaacactttgtaa |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||| || |||| |||||| || | | |||||||||| ||||| |||| | | |||||| |
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| T |
7760414 |
ttttgaaaaacaccttcttctaggtaaaggctcacacccttttaagatcagtttctgagctacactccaatcatcaggacaagctccagaagccttgtaa |
7760315 |
T |
|
| Q |
116 |
ttcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaa |
215 |
Q |
| |
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|||| |||| |||||||| || | | |||||||||||||||||| || ||||| ||||||||||| || ||||| | ||||| || || ||||||| |
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| T |
7760314 |
ctcatgaactgtgacaacaagtctgcacttttctcacaagaatgaccaactgatgacaccatttcagtgatcccagttcttgaatccttgcctaaaggaa |
7760215 |
T |
|
| Q |
216 |
gtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttag |
315 |
Q |
| |
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||| ||| | ||| |||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
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| T |
7760214 |
gttgatgtctttggaggaagattttcagctcatttgcaatgttgggtcttgaaagatcaatgctttcataaccaagaagctgtttttccatctgggctag |
7760115 |
T |
|
| Q |
316 |
tttctttt |
323 |
Q |
| |
|
|||||||| |
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|
| T |
7760114 |
tttctttt |
7760107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 12052462 - 12052579
Alignment:
| Q |
63 |
tcaatttctgtgcaaaattccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacc |
162 |
Q |
| |
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||||||||| |||||| ||||||| ||||| ||||||| || |||||| | ||||| | |||||||| || || ||||||||||||| ||||||||| |
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| T |
12052462 |
tcaatttctatgcaaatctccaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacc |
12052561 |
T |
|
| Q |
163 |
cacagatgaaaccatttc |
180 |
Q |
| |
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|||| ||||||||||||| |
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|
| T |
12052562 |
cacaaatgaaaccatttc |
12052579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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