View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_20 (Length: 258)
Name: NF14035_high_20
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 31444840 - 31444602
Alignment:
| Q |
6 |
catagggctgtcctgaatgacacagatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgt |
105 |
Q |
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| T |
31444840 |
catagggctgtcctgaatgacacagatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgt |
31444741 |
T |
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| Q |
106 |
agttgctgtgataaaggatcaacatcccattagttcactaaacactcatatctataactcgaaatcaatgttaattcattatgttaagaaaaataaaata |
205 |
Q |
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| T |
31444740 |
agttgctgtgataaaggatcaacatcccattagttcactaaacactcatatctataactagaaatcaatgttaattcattatgttaagaaaaataaaata |
31444641 |
T |
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| Q |
206 |
acatggtttgatatttagatgggggtatggtttgaaatg |
244 |
Q |
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| T |
31444640 |
acatggtttgatatttagatgggggtatggtttgaaatg |
31444602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 31434645 - 31434537
Alignment:
| Q |
6 |
catagggctgtcctgaatgacacagatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgt |
105 |
Q |
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| T |
31434645 |
catatggctgtcttgaatgatacagttgggtttgtggacactaaatccggattgtttatcaaatcttgattgatggcttttcccgcttgaccataattgt |
31434546 |
T |
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| Q |
106 |
agttgctgt |
114 |
Q |
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| T |
31434545 |
agtcgctgt |
31434537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 31430513 - 31430378
Alignment:
| Q |
12 |
gctgtcctgaatgacacagatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagttgc |
111 |
Q |
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|||||| ||||||| |||| |||||||| ||| |||| ||||||||||||||||||||||| |||||| ||| |||| ||| |||| |||||||| |||| |
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| T |
31430513 |
gctgtcttgaatgatacagttgggtttgtggagactagatccggattgtttatcaaatcttcattaatagctttacccgcttgaccgtaattgtaattgc |
31430414 |
T |
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| Q |
112 |
tgtgataaaggatcaacatcccattagttcactaaa |
147 |
Q |
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| T |
31430413 |
tgtgaacaagggtcaacgttgcattagtccactaaa |
31430378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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