View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_23 (Length: 243)
Name: NF14035_high_23
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 44756275 - 44756497
Alignment:
| Q |
9 |
atatatcagtaaatagaaaatcacggaatttgatttaattcttttcattaaattattgtcattattacttgtgtaataagcatatgaacattaataagtg |
108 |
Q |
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| T |
44756275 |
atatatcagcaaatagaaaatcacggaatttgatttaattcttttcattaaatttttgtcattattacttgtgtaataagcata------------agtg |
44756362 |
T |
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| Q |
109 |
aagtcacaaacatttgactctgtctttgtctttgtgtcttctttctctctttctgaaccaaacaccaaacacagtacaacgttgaagaatgtcgaaatcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44756363 |
aagtcacaaacatttgactctgtctttgtctttgtgtcttctttttctctttctgaaccaaacaccaaacacagtacaacgttgaagaatgtcgaaatcc |
44756462 |
T |
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| Q |
209 |
aacaccaccaacacaacaccaccaaaacccacatg |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44756463 |
aacaccaccaacacaacaccaccaaaacccacatg |
44756497 |
T |
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