View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_27 (Length: 206)
Name: NF14035_high_27
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 30873334 - 30873459
Alignment:
| Q |
66 |
aacaaaagttggatgattttgttgagtatgtttttatttctcttctaatcaattattctttctcattaaaataaatcatttatttatcaatttaattaca |
165 |
Q |
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| T |
30873334 |
aacaaaagttggatgattttgttgagtatgtttttatttctcttctaatcaattattctttctcattaaaataaatcatttatttatcaatttaattaca |
30873433 |
T |
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| Q |
166 |
gtaaagtatttcacctacaccctatg |
191 |
Q |
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| T |
30873434 |
ctaaagtatttcccctacaccctatg |
30873459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 30873286 - 30873314
Alignment:
| Q |
19 |
caagattctattttggcgactcaattgga |
47 |
Q |
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| T |
30873286 |
caagattctattttggcgactcaattgga |
30873314 |
T |
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