View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_high_28 (Length: 201)
Name: NF14035_high_28
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 149640 - 149762
Alignment:
| Q |
16 |
atgaattataaggaatttttctttgtatcaagctctcatgccacttcacaataattccatacctcatgtgaacaacataatatggagggagagtgaagga |
115 |
Q |
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| T |
149640 |
atgaattataaggaatttttctttgtatcaagctctcatgccacttcacaataattccatacctcatgtgaacaacataatat----ggagagtgaagga |
149735 |
T |
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| Q |
116 |
agaggtgatgataattaattgcatata |
142 |
Q |
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| T |
149736 |
agaggtgatgataattgattgcatata |
149762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 154777 - 154883
Alignment:
| Q |
47 |
gctctcatgccacttcacaataattccatacctcatgtgaacaacataatatggagggagagtgaaggaagaggtgatgataatt-aattgcatatacaa |
145 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
154777 |
gctctcatgctacttcacaataattccataccgcatgtgaacaacataatat----ggagagtgaaggaagaggtgatgataattgagttgcatatacaa |
154872 |
T |
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| Q |
146 |
tttaagattac |
156 |
Q |
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| T |
154873 |
ttgaagattac |
154883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23691843 - 23691880
Alignment:
| Q |
16 |
atgaattataaggaatttttctttgtatcaagctctca |
53 |
Q |
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||||||| |||||| ||||||||||||||||||||||| |
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| T |
23691843 |
atgaattttaaggattttttctttgtatcaagctctca |
23691880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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