View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_10 (Length: 433)
Name: NF14035_low_10
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 10370312 - 10369895
Alignment:
| Q |
1 |
aattggtatatcatgcatactatagtattgtgtacatctcataaatcacacctttcgaagtactatattctgcccatgaggtcattcagataaaactccc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10370312 |
aattggtatatcatgcatactatagtattgtgtacatctcataaatcacacctttcgaagtactatattctgcccatgaggtcattcagataaaactccc |
10370213 |
T |
|
| Q |
101 |
atacaaccttagtatcgtgcatccaatcaagtgtgtattgctttcatgtgaatgaaataaaagactttacaaattttgtagttatagtaaaatgaaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10370212 |
atacaaccttagtatcgtgcatccaatcaagtgtgtattgctttcatgtgaatgaaataaaagactttacaaattttgtagttatagtaaaatgaaacat |
10370113 |
T |
|
| Q |
201 |
aaaatttgtatggtatgtactgcaaactttgttggtatataccacatagatgatgttccgtcatatctttttacgtgtgttagtttacaactgttagtat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10370112 |
aaaatttgtatggtatgtactgcaaactttgttggtatataccacatagatgatgttccgtcatatctttttacgtgtgttggtttacaactgttagtat |
10370013 |
T |
|
| Q |
301 |
acaataaccagaaaaccaatcatatgtgttctattaaagttaactaaatataaaaaaccattatgcaatttataatagaccttttggacaatcggacaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10370012 |
acaataaccagaaaaccaatcatatgtgttctattaaagttaactaaatataaaaaatcattatgcaatttataatagaccttttggacaatcggacaat |
10369913 |
T |
|
| Q |
401 |
cagacataagagtcttga |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
10369912 |
cagacataagagtcttga |
10369895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 10370377 - 10370505
Alignment:
| Q |
13 |
atgcatactatagtattgtgtacatctcataaatcacacctttcgaagtactatattctgcccatgaggtcattcagataaaactcccatacaaccttag |
112 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||| ||| |||||||| ||||||| |||||| |||||| | |||||||||| |||||||||| |
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| T |
10370377 |
atgcatactattgtattgagtacatttcataaatcacacattttgaagtactctattctgtccatgaagtcattatggtaaaactcccttacaaccttaa |
10370476 |
T |
|
| Q |
113 |
tatcgtgcatccaatcaagtgtgtattgc |
141 |
Q |
| |
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|| |||||| |||||||||||||||||| |
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| T |
10370477 |
gattgtgcattcaatcaagtgtgtattgc |
10370505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 10370523 - 10370572
Alignment:
| Q |
142 |
tttcatgtgaatgaaataaaagactttacaaattttgtagttatagtaaaat |
193 |
Q |
| |
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| T |
10370523 |
tttcatgtgaatgaaataaaagactttacaaa--ttgtaattatagtaaaat |
10370572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 10370659 - 10370723
Alignment:
| Q |
298 |
tatacaataaccagaaaaccaatcatatgtgttctattaaagttaactaaatataaaaaaccatt |
362 |
Q |
| |
|
||||||||||| | ||||||||| ||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
10370659 |
tatacaataactaaaaaaccaattatacatgctctattaaagttaactaaattcaaaaaaccatt |
10370723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 24995012 - 24995318
Alignment:
| Q |
4 |
tggtatatcatgcatactatagtattgtgtacatctcataaatcacacctttcgaa-gtactatattctgcccatgaggtcattcagataaaactcccat |
102 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| ||| |||||||| | ||||| |||||| |||||||||| | | |
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| T |
24995012 |
tggtataacatgcatactatagtattgagtaaatctcataaatcacacatttcgaacgtattatattcttctcatgaagtcattatgataaaactctctt |
24995111 |
T |
|
| Q |
103 |
acaaccttagtatcgtgcatccaatcaagtgtgtattgctttcatgtg---------------------aatgaaataaaagactttacaaattttgtag |
181 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| |
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| T |
24995112 |
acaaccttagcactgtgcatccaatcaagtgcatattgctttcatgtgaaacaaaaaaagtttcatgtaaatgaaataaaagactaaataaattttgtaa |
24995211 |
T |
|
| Q |
182 |
ttatagtaaaatgaaacataaaatttgtatggtatgtactgcaaactttgttggtatataccacatagatgatgttccgtcatatctttttacgtgtgtt |
281 |
Q |
| |
|
|||||||||||| ||||||||||| | || ||||||||| |||||||||||||| ||||||| | |||||| ||| |||||||| | ||||||| |
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| T |
24995212 |
ttatagtaaaataaaacataaaatatttagagtatgtactataaactttgttggtaggtaccacaga---gatgtttcgtaatatctttcttggtgtgtt |
24995308 |
T |
|
| Q |
282 |
agtttacaac |
291 |
Q |
| |
|
|||||||||| |
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|
| T |
24995309 |
agtttacaac |
24995318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 24995883 - 24995799
Alignment:
| Q |
153 |
tgaaataaaagactttacaaattttgtagttatagtaaaatgaaacataaaatttgtatggtatgtactgcaaactttgttggta |
237 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
24995883 |
tgaaataaaagacttaacaaattttgtaattatagtaaaatgaaacataaaatatgtagattatgtaccccaaactttgttggta |
24995799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 24995373 - 24995460
Alignment:
| Q |
330 |
tctattaaagttaactaaatataaaaaaccattatgcaatttataatagaccttttggacaatcggacaatcagacataagagtcttg |
417 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |||||| |||||| ||| ||| ||||||||||| ||| |||||||| |
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| T |
24995373 |
tctattaaagttaactaaatattaaataccattatgcaaattataaatgaccttctggtcaaccggacaatcaggcattcgagtcttg |
24995460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 24995779 - 24995698
Alignment:
| Q |
337 |
aagttaactaaatataaaaaaccattatgcaatttataatagaccttttggacaatcggacaatcagacataagagtcttga |
418 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || || ||| ||||||||||||| |||| ||||||||| |
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| T |
24995779 |
aagttaactaaatataaaataccattatgcaatttataactgatctcctggtcaatcggacaatcgtacatcggagtcttga |
24995698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 24995956 - 24995909
Alignment:
| Q |
4 |
tggtatatcatgcatactatagtattgtgtacatctcataaatcacac |
51 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24995956 |
tggtatagcaagcatactatagtatttagtacatctcataaatcacac |
24995909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 11683848 - 11683991
Alignment:
| Q |
148 |
gtgaatgaaataaaagactttacaaattttgtagttatagtaaaatgaaacataaaatttgtatggtatgtactgcaaactttgttggtatataccacat |
247 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| |||| | ||| ||||||| |
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|
| T |
11683848 |
gtgaatgaaataaaagactttataaattttgtaattatagtaaaatgaaacataaaatatgtagagtatgtaccgcaaaatttgctagtaggtaccacaa |
11683947 |
T |
|
| Q |
248 |
agatgatgttccgtcatatctttttacgtgtgttagtttacaac |
291 |
Q |
| |
|
||||| |||||| || |||||| | || |||||||||||||| |
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|
| T |
11683948 |
agatggtgttccaccacatctttgttggtatgttagtttacaac |
11683991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 11684009 - 11684127
Alignment:
| Q |
298 |
tatacaataaccagaaaaccaatcatatgtgttctattaaagttaactaaatataaaaaaccattatgcaatttataatagaccttttggacaatcggac |
397 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || ||||||||||||| |||||||| | |||||||||||||||| ||| |||| ||| |||| |
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|
| T |
11684009 |
tatacagtaaccagaaaaccaattatacatgctcagttaaagttaactatatataaaatagtattatgcaatttataactaaccgcttggtcaaccggag |
11684108 |
T |
|
| Q |
398 |
aatcagacataagagtctt |
416 |
Q |
| |
|
|||||| ||| |||||||| |
|
|
| T |
11684109 |
aatcaggcatcagagtctt |
11684127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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