View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_11 (Length: 377)
Name: NF14035_low_11
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 42634295 - 42634103
Alignment:
| Q |
7 |
atatcatgtgagatatggcttgaaaggttttaaattggaatatgctctattctgtacccaagcacatgattctatatatgaaattgctactactgaaact |
106 |
Q |
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| T |
42634295 |
atatcatgtgagatatggcttgaaaggttttaaattggaatatgctctattctgtacaaaagcacatgattctatatatgaaattgctactactgaaact |
42634196 |
T |
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| Q |
107 |
gtcattggattttgaaaccgtgttttgaaactttgtattcacattatcttgtgcctcaatggtaacaatgttgattttcatttaaattggctg |
199 |
Q |
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| T |
42634195 |
gtcatttgattttgaaaccgtgttttgaaactttgtattcacattatcttgtgcctcagtggtaacaatgttgattttcatttaaattggctg |
42634103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 42634075 - 42633946
Alignment:
| Q |
226 |
gcatactataatttatgagttatatatcttttgagaaatgctattcaatacggaaggataggcaacgaaatttcacggacgcgtgattgtagctcatttg |
325 |
Q |
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| T |
42634075 |
gcatactataatttatgagttatatatcttttgagaaatgttgttcaatatggaaggataggcaacgaaatttcacggacgcgtgattgtagctcatttg |
42633976 |
T |
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| Q |
326 |
cacgcgcttcagtttctgaatttttttttt |
355 |
Q |
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| T |
42633975 |
cacgcgctgcagtttctgattttttttttt |
42633946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 39677842 - 39677742
Alignment:
| Q |
258 |
gagaaatgctattcaatacggaaggataggcaacgaaatttcacggacgcgtgattgtagctcatttgcacgcgcttcagtttctgaattttttttttaa |
357 |
Q |
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| T |
39677842 |
gagaaatgatgttcaatacggaaggatagacaacgaaatttcacggatgcatgattgtagctcatttgcacgtgctgcagtttctg-attttttttttaa |
39677744 |
T |
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| Q |
358 |
tt |
359 |
Q |
| |
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|| |
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| T |
39677743 |
tt |
39677742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 6757679 - 6757780
Alignment:
| Q |
257 |
tgagaaatgctattcaatacggaaggataggcaacgaaatttcacggacgcgtgattgtagctcatttgcacgcgcttcagtttctgaatttttttttta |
356 |
Q |
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||||||||| | |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
6757679 |
tgagaaatgatgttcagtacggaaggatagacaacgaaatttcacggacgtttgattgtagctcatttgcacgcgctgcggtttctg-atttttttttta |
6757777 |
T |
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| Q |
357 |
att |
359 |
Q |
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||| |
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| T |
6757778 |
att |
6757780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 49964566 - 49964501
Alignment:
| Q |
290 |
acgaaatttcacggacgcgtgattgtagctcatttgcacgcgcttcagtttctgaatttttttttt |
355 |
Q |
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| T |
49964566 |
acgaaatttcacggacgtgtggttgcagctattttgcacgcgcttcagtttctgattttttttttt |
49964501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 38174462 - 38174525
Alignment:
| Q |
290 |
acgaaatttcacggacgcgtgattgtagctcatttgcacgcgcttcagtttctgaatttttttt |
353 |
Q |
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| T |
38174462 |
acgaaatttcacggacgcatggttgcagctattttgcacgtgcttcagtttctgattttttttt |
38174525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 15228226 - 15228288
Alignment:
| Q |
290 |
acgaaatttcacggacgcgtgattgtagctcatttgcacgcgcttcagtttctgaattttttt |
352 |
Q |
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||||||||||||||||||||| || |||| |||||||||||||||| |||||| ||||||| |
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| T |
15228226 |
acgaaatttcacggacgcgtgttttcagctattttgcacgcgcttcagcttctgatttttttt |
15228288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 51286510 - 51286551
Alignment:
| Q |
6 |
aatatcatgtgagatatggcttgaaaggttttaaattggaat |
47 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||| |
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| T |
51286510 |
aataccatgtgagatatagtttgaaaggttttaaattggaat |
51286551 |
T |
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