View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_13 (Length: 360)

Name: NF14035_low_13
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_13
NF14035_low_13
[»] chr6 (11 HSPs)
chr6 (70-166)||(1067793-1067890)
chr6 (80-166)||(2814890-2814976)
chr6 (75-166)||(444519-444610)
chr6 (72-165)||(6200163-6200256)
chr6 (80-166)||(24640352-24640438)
chr6 (78-162)||(23774070-23774154)
chr6 (80-167)||(26393988-26394075)
chr6 (101-165)||(34710135-34710199)
chr6 (96-158)||(2993592-2993654)
chr6 (68-119)||(12324163-12324214)
chr6 (123-166)||(4032327-4032370)
[»] chr7 (7 HSPs)
chr7 (78-165)||(8163644-8163731)
chr7 (73-166)||(41326037-41326130)
chr7 (78-166)||(40337066-40337154)
chr7 (79-161)||(35589412-35589494)
chr7 (78-166)||(28089134-28089223)
chr7 (78-165)||(2362383-2362470)
chr7 (77-165)||(31637706-31637802)
[»] chr5 (18 HSPs)
chr5 (68-167)||(3729332-3729431)
chr5 (72-162)||(9913797-9913887)
chr5 (67-165)||(34766885-34766983)
chr5 (72-167)||(41929336-41929431)
chr5 (81-167)||(21583853-21583939)
chr5 (78-167)||(8159069-8159158)
chr5 (76-166)||(39508316-39508406)
chr5 (66-167)||(3711171-3711276)
chr5 (80-167)||(21020686-21020773)
chr5 (78-167)||(2068964-2069049)
chr5 (79-166)||(9793635-9793722)
chr5 (67-166)||(9793732-9793831)
chr5 (72-155)||(25081762-25081845)
chr5 (72-155)||(25139731-25139814)
chr5 (73-166)||(20736158-20736251)
chr5 (84-160)||(20815677-20815753)
chr5 (103-165)||(41910219-41910281)
chr5 (71-166)||(38451039-38451123)
[»] chr4 (13 HSPs)
chr4 (71-166)||(35929701-35929796)
chr4 (79-166)||(21555382-21555469)
chr4 (78-160)||(56100144-56100226)
chr4 (88-165)||(827840-827917)
chr4 (78-166)||(36609413-36609502)
chr4 (79-167)||(12701040-12701128)
chr4 (71-166)||(23249464-23249559)
chr4 (78-166)||(19598368-19598456)
chr4 (70-166)||(44243696-44243792)
chr4 (78-165)||(35749386-35749473)
chr4 (68-130)||(53584602-53584664)
chr4 (76-161)||(41842787-41842871)
chr4 (102-167)||(27733401-27733466)
[»] chr2 (24 HSPs)
chr2 (72-166)||(27004444-27004538)
chr2 (83-166)||(4382213-4382296)
chr2 (70-164)||(37060081-37060175)
chr2 (78-167)||(6974516-6974605)
chr2 (70-167)||(13274194-13274290)
chr2 (72-165)||(5807321-5807413)
chr2 (81-166)||(15070390-15070475)
chr2 (78-166)||(5958967-5959055)
chr2 (70-167)||(30609685-30609782)
chr2 (78-166)||(21423366-21423454)
chr2 (78-162)||(24475936-24476020)
chr2 (71-141)||(37140159-37140229)
chr2 (78-162)||(28107492-28107576)
chr2 (78-166)||(37802836-37802924)
chr2 (70-164)||(10217357-10217451)
chr2 (78-161)||(30393597-30393680)
chr2 (67-166)||(14786230-14786323)
chr2 (101-164)||(27969511-27969574)
chr2 (83-160)||(43022888-43022964)
chr2 (78-158)||(22194291-22194371)
chr2 (86-134)||(27404647-27404695)
chr2 (111-166)||(30757184-30757239)
chr2 (105-166)||(7747945-7748006)
chr2 (101-162)||(15431254-15431315)
[»] scaffold0306 (1 HSPs)
scaffold0306 (78-166)||(13056-13144)
[»] scaffold0152 (1 HSPs)
scaffold0152 (78-166)||(22183-22271)
[»] chr3 (15 HSPs)
chr3 (71-166)||(36404222-36404317)
chr3 (78-166)||(39391958-39392046)
chr3 (67-167)||(45602974-45603074)
chr3 (78-164)||(35534483-35534569)
chr3 (73-167)||(37115886-37115980)
chr3 (78-166)||(46487271-46487358)
chr3 (67-166)||(29360472-29360571)
chr3 (70-167)||(52742345-52742442)
chr3 (91-166)||(3618340-3618415)
chr3 (89-161)||(16353494-16353566)
chr3 (70-160)||(14201710-14201798)
chr3 (80-166)||(48944105-48944191)
chr3 (93-166)||(54882992-54883065)
chr3 (102-165)||(47599389-47599452)
chr3 (94-164)||(48644538-48644608)
[»] chr1 (16 HSPs)
chr1 (70-164)||(41998881-41998975)
chr1 (72-167)||(6750309-6750404)
chr1 (80-166)||(18808781-18808867)
chr1 (68-161)||(794904-794997)
chr1 (68-164)||(24909510-24909606)
chr1 (78-166)||(39001948-39002036)
chr1 (85-166)||(11121865-11121946)
chr1 (78-166)||(3695407-3695495)
chr1 (78-141)||(4792593-4792656)
chr1 (80-161)||(571650-571731)
chr1 (78-161)||(26653945-26654028)
chr1 (72-161)||(44272362-44272452)
chr1 (70-155)||(1585853-1585938)
chr1 (98-166)||(36290612-36290680)
chr1 (104-166)||(7409823-7409885)
chr1 (78-127)||(9224863-9224912)
[»] chr8 (18 HSPs)
chr8 (68-167)||(4623849-4623948)
chr8 (70-161)||(23403591-23403682)
chr8 (70-165)||(30204649-30204744)
chr8 (80-166)||(39436844-39436930)
chr8 (68-141)||(22798532-22798605)
chr8 (78-166)||(21567708-21567796)
chr8 (78-161)||(3001382-3001465)
chr8 (72-167)||(16655973-16656068)
chr8 (72-162)||(14842303-14842393)
chr8 (75-165)||(41787494-41787584)
chr8 (68-167)||(37629993-37630092)
chr8 (80-166)||(36470135-36470222)
chr8 (72-165)||(4234173-4234266)
chr8 (67-167)||(29958513-29958613)
chr8 (70-161)||(23275532-23275623)
chr8 (78-140)||(45310041-45310103)
chr8 (80-162)||(36046533-36046614)
chr8 (78-118)||(4414227-4414267)
[»] scaffold0302 (1 HSPs)
scaffold0302 (70-167)||(18502-18599)
[»] scaffold0532 (1 HSPs)
scaffold0532 (78-166)||(11320-11408)
[»] scaffold0025 (1 HSPs)
scaffold0025 (73-164)||(67868-67959)
[»] scaffold0121 (1 HSPs)
scaffold0121 (80-166)||(37403-37489)
[»] scaffold1248 (1 HSPs)
scaffold1248 (79-167)||(970-1058)
[»] scaffold0952 (1 HSPs)
scaffold0952 (79-167)||(1255-1343)
[»] scaffold0140 (1 HSPs)
scaffold0140 (78-166)||(21477-21565)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 1067793 - 1067890
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagtta-tcttttcatatgttttagttttagtcc 166  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  1067793 ttagagcttgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttaccctttttatatgttttagttttagtcc 1067890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 2814976 - 2814890
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||    
T  2814976 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcattttacatgttttagttttagtcc 2814890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 444519 - 444610
Alignment:
Q  75 gcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | | ||||||||||||||||||    
T  444519 gcatgtttaaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtcc 444610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 6200256 - 6200163
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | || ||||||||||||||    
T  6200256 agagcctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcacaatagttatccttttacatattttagttttagtc 6200163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 24640438 - 24640352
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||  ||||||||||||||||||||    
T  24640438 tttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctcataatagttatccttctatatgttttagttttagtcc 24640352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 23774070 - 23774154
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||    
T  23774070 tgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctcataatagttatccttttatatgttttagtttta 23774154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 26394075 - 26393988
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||||||||||||||||||||||||||||||| || |  ||||||| ||||| ||||| ||| | |||||||||||||||||||    
T  26394075 tttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctcgcaatatttatcattttacatgttttagttttagtcct 26393988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 34710135 - 34710199
Alignment:
Q  101 agtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    |||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||    
T  34710135 agtttttgaaatatacaagttctcttctcacagtagttattcttttatatgttttagttttagtc 34710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 2993654 - 2993592
Alignment:
Q  96 ttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagt 158  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  2993654 tttttagtttttgaaatatacaagttctcttctcacaatagttatccttttatatcttttagt 2993592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 12324163 - 12324214
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaag 119  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  12324163 atttagagcctgtttgaagtagtttttgttttcagtttttgaaatatacaag 12324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 4032370 - 4032327
Alignment:
Q  123 tcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  4032370 tcttctcacaatagttatctttttatatgttttagttttagtcc 4032327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 8163731 - 8163644
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  8163731 tgtttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcacaatagttatctttttacatgttttagttttagtc 8163644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 41326037 - 41326130
Alignment:
Q  73 gagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || |  ||||||||||||||||||| ||| | ||||||||||||||||||    
T  41326037 gagcatgtttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcacaatagttatccttttacatgttttagttttagtcc 41326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 40337154 - 40337066
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||| ||| | ||||||||||||||||||    
T  40337154 tgtttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcacaatagttatcattttacatgttttagttttagtcc 40337066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 35589494 - 35589412
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||| ||| |||||||||| ||| |||| ||||||||||    
T  35589494 gtttgaaatagtttttgttttcgatttttgaaatatacaagtcctcttttcataatagttatccttttatatattttagtttt 35589412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 28089134 - 28089223
Alignment:
Q  78 tgtttgaaatagtttttgtttt-cagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||| | |||||||||| ||||||||||||||||||| |  |||||| |||||||||||| ||| | ||||||||||||||||||    
T  28089134 tgtttgaaacaatttttgtttttcagtttttgaaatatacaaatcatcttcttacaatagttatcattttacatgttttagttttagtcc 28089223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 2362470 - 2362383
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||| | |||||||||||||||||| |||||||||| |  ||||||||||||||||||| ||| |  | ||||||||||||||    
T  2362470 tgtttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcacaatagttatcattttacttattttagttttagtc 2362383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 31637706 - 31637802
Alignment:
Q  77 atgtttgaaatagtttttgttttcagtttttgaa--------atatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||||||| ||||||||||||||||| ||        ||||| ||||| | |||||| |||||||||| ||| |||||||||||||||||||    
T  31637706 atgtttgaaatagcttttgttttcagtttttaaaatatatatatatataagttattttctcataatagttatccttttatatgttttagttttagtc 31637802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 3729431 - 3729332
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | |||||||||||||||||||    
T  3729431 atttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcct 3729332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 9913797 - 9913887
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||    
T  9913797 agagcatgtttgaaatagtttttgtttttagtttttgaaatatacaagttctcatctcataatagttatctttttacatgttttagtttta 9913887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 34766983 - 34766885
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||| | |||||||||||||||||    
T  34766983 aatttagagcctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttattcttttacatgttttagttttagtc 34766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 41929336 - 41929431
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| | |||||||||||||||||||    
T  41929336 agagcctgtttgaaatagtttttgttttcagtttttgaaatatgcaagttctcttttcgcaatagttatccttttacatgttttagttttagtcct 41929431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 21583853 - 21583939
Alignment:
Q  81 ttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| | |||||||||||||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcataatagttatctttttacatgttttagttttagtcct 21583939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 8159158 - 8159069
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||| | |||||||||||||||||||    
T  8159158 tgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcct 8159069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 39508406 - 39508316
Alignment:
Q  76 catgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||  ||| | ||||||||||||||||||    
T  39508406 catgtttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcacaatagttattcttttacatgttttagttttagtcc 39508316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 3711171 - 3711276
Alignment:
Q  66 taatttagagcatgtttgaaatagtttttgttttcagtttttgaa----atatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||||| || |||||||||||||||||| | ||||||||| |||    
T  3711171 taattaagagcatgtttgaaatagtttttgttttcagtttttgaaatatatatacaagttctattttcacaatagttatctttttacatgttttagattt 3711270  T
Q  162 agtcct 167  Q
    | ||||    
T  3711271 aatcct 3711276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 21020686 - 21020773
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  21020686 tttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcgcaatagttatccttttatatgatttagttttagtcct 21020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 2068964 - 2069049
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||  ||||||||||||||||||||    
T  2068964 tgtttgaaatagtttttgttttcagtttttgaaatat--aagtcttcttctcacaatatttatctttt--tatgttttagttttagtcct 2069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 9793722 - 9793635
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||||||||||||| | | ||| | |||||||||||| ||| | ||||||||||||||||||    
T  9793722 gtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacatgttttagttttagtcc 9793635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 9793831 - 9793732
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| | |||||||||||| ||| |  |||||||||||||||||    
T  9793831 aattaagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacttgttttagttttagtcc 9793732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 25081762 - 25081845
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgtttt 155  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||| ||| |||||||||    
T  25081762 agagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 25139731 - 25139814
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgtttt 155  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||| ||| |||||||||    
T  25139731 agagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagttatcattttatatgtttt 25139814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 20736251 - 20736158
Alignment:
Q  73 gagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| |||| ||| | |||||||||||||| ||| | ||||||||||||||||||    
T  20736251 gagcttgtttgaaatagtttttgttttcaatttttgaaaaatataagtcctcctttcacaatagttatcattttacatgttttagttttagtcc 20736158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 20815677 - 20815753
Alignment:
Q  84 aaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttt 160  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||| ||||||||| ||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcacaatagttatcattttatatgtttttgttt 20815753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 41910281 - 41910219
Alignment:
Q  103 tttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||| |||||||||||| ||||| |||||||||||||| ||| | |||||||||||||||||    
T  41910281 tttttaaaatatacaagtcctcttttcacaatagttatcattttacatgttttagttttagtc 41910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 38451123 - 38451039
Alignment:
Q  71 tagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||| ||||||||||||||||||||||||||||           |||| | |||||||||||||||||| ||| | ||||||||||||||||||    
T  38451123 tagagcctgtttgaaatagtttttgttttcagttt-----------aagtccccttctcacaatagttatccttttacatgttttagttttagtcc 38451039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 35929701 - 35929796
Alignment:
Q  71 tagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  35929701 tagagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcacaatagttatcattttatatgttttagttttagtcc 35929796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 21555382 - 21555469
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||| | ||||||||||||||||||    
T  21555382 gtttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcacaatagttatccttttacatgttttagttttagtcc 21555469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 56100226 - 56100144
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||||||||||||    
T  56100226 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatccttttacatgttttagttt 56100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 827840 - 827917
Alignment:
Q  88 agtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcacaatagttatctttttacatgttttagttttagtc 827917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 36609502 - 36609413
Alignment:
Q  78 tgtttgaaatagtttttgtttt-cagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||||||    
T  36609502 tgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagtcc 36609413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 12701040 - 12701128
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||  ||| | |||||||||||||||||||    
T  12701040 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttcttacaatagttattcttttacatgttttagttttagtcct 12701128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 23249464 - 23249559
Alignment:
Q  71 tagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||| ||||||||| | ||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||| | ||||||||||||||||||    
T  23249464 tagagcctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcacaatagttatccttttacatgttttagttttagtcc 23249559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 19598368 - 19598456
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||  | |||||| ||||||| |||||| | ||||||||||||||||||    
T  19598368 tgtttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctcaaaatagttttctttttacatgttttagttttagtcc 19598456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 44243792 - 44243696
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||| |||||||||||  ||||||||| ||||||||||||||||||||  |||||| |||||||||||| ||| |||||||||| |||||||||    
T  44243792 ttagagcctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttcttacaatagttatccttttatatgttttaattttagtcc 44243696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 35749386 - 35749473
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||  |||||||| |||| ||||||||| |||||||||||||||||||    
T  35749386 tgtttgaaataatttttattttcaatttttgaaatatacaagtcatcttctcataataattatctttttatatgttttagttttagtc 35749473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 53584664 - 53584602
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  53584664 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 53584602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 41842787 - 41842871
Alignment:
Q  76 catgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| |||||||||| | |||||||||||||    
T  41842787 catgtttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcacaattgttatctttt-acatgttttagtttt 41842871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 27733401 - 27733466
Alignment:
Q  102 gtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||    
T  27733401 gtttttgaaatatacaagacctcttctcacaatagttatccttttacatgttttagttttagtcct 27733466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 27004444 - 27004538
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  27004444 agagcatgtttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcacaatagttatccttttatatgttttagttttagtcc 27004538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 4382213 - 4382296
Alignment:
Q  83 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcattttacatgttttagttttagtcc 4382296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 37060175 - 37060081
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||||    
T  37060175 ttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagt 37060081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 6974605 - 6974516
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||||||||    
T  6974605 tgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcacaatagttatcattttacatgttttagttttagtcct 6974516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 13274194 - 13274290
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  13274194 ttagagcctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcacaatagttatctttt-acatgttttagttttagtcct 13274290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 5807413 - 5807321
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  5807413 agagcatgtttgaaatagtttttgttt-cagtttttgaaatatacaaattcccttttcacaatagttatccttttatatgttttagttttagtc 5807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 15070475 - 15070390
Alignment:
Q  81 ttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttatatgtttttgttttagtcc 15070390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 5958967 - 5959055
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||| | ||||||||||||||||||    
T  5958967 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgtaatagttatccttttacatgttttagttttagtcc 5959055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 30609782 - 30609685
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||||||  ||||||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||| | |||||||||||||||||||    
T  30609782 ttagagcccgtttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcacaatagttatcattttacatgttttagttttagtcct 30609685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 21423366 - 21423454
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||| | | | ||||||||||||||||||    
T  21423366 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcacaatagttatcctattacatgttttagttttagtcc 21423454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 24476020 - 24475936
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||| | ||||||||||||||    
T  24476020 tgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcacaatagttatctttttacatgttttagtttta 24475936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 37140229 - 37140159
Alignment:
Q  71 tagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatc 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  37140229 tagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatc 37140159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 28107576 - 28107492
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||    
T  28107576 tgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagtttta 28107492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 37802924 - 37802836
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||| | ||||||||||||||||||  |||||||| |||| ||||||||| | ||||||||||||||||||    
T  37802924 tgtttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctcataatatttatctttttacatgttttagttttagtcc 37802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 10217451 - 10217357
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| | | |||||||||  ||| | ||||||||||||||||    
T  10217451 ttagagtatgtttgaaatagtttttattttcagtttttgaaatatacaagttccctttttagaatagttattcttttacatgttttagttttagt 10217357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 30393680 - 30393597
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||| |||||| ||| | |||||||||||||    
T  30393680 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttttgataatggttatccttttacatgttttagtttt 30393597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 14786230 - 14786323
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||| || |||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||| | | | ||||||||||||||||||    
T  14786230 aatttagggcctgtttgaaatagtttttgttttc------tgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtcc 14786323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 27969511 - 27969574
Alignment:
Q  101 agtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||    
T  27969511 agtttttgaaatatacaagttcacttctcacaatagttatccttttatatgttttaattttagt 27969574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 43022964 - 43022888
Alignment:
Q  83 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttt 160  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| ||||| ||| ||||||||||||||    
T  43022964 gaaataatttttgtttttagtttttaaaatatacaagtcctcttctcac-ataattatccttttatatgttttagttt 43022888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 22194371 - 22194291
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagt 158  Q
    ||||||||||||||||||||||  ||||||||||||||||||| || || | | |||||||||| ||| | ||||||||||    
T  22194371 tgtttgaaatagtttttgtttttggtttttgaaatatacaagtcctttttttataatagttatcattttacatgttttagt 22194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 27404695 - 27404647
Alignment:
Q  86 atagtttttgttttcagtttttgaaatatacaagttctcttctcacaat 134  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagtcctcttctcacaat 27404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 30757239 - 30757184
Alignment:
Q  111 atatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||    
T  30757239 atatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtcc 30757184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 7748006 - 7747945
Alignment:
Q  105 tttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||| ||||||| |||| ||||||| ||| | ||||||||||||||||||    
T  7748006 tttgaaatatacaagtcctcttcttacaagagttatcattttacatgttttagttttagtcc 7747945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 15431254 - 15431315
Alignment:
Q  101 agtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||||||||||| || |||||| |  |||||||||| ||| | ||||||||||||||    
T  15431254 agtttttgaaatatacatgtcctcttcccgtaatagttatccttttacatgttttagtttta 15431315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 13144 - 13056
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||    
T  13144 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtcc 13056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 22183 - 22271
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||    
T  22183 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtcc 22271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 36404317 - 36404222
Alignment:
Q  71 tagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||    
T  36404317 tagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtcc 36404222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 39391958 - 39392046
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||||||||||||||||    
T  39391958 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcacaatagttatccttttacatgttttagttttagtcc 39392046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 45602974 - 45603074
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||| | ||||||||||||||||||    
T  45602974 aatttagagtctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcacaatagttatccttttacatgttttagttttagtcc 45603073  T
Q  167 t 167  Q
    |    
T  45603074 t 45603074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 35534483 - 35534569
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||    
T  35534483 tgtttaaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcacaatagttatcattttatatgttttagttttagt 35534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 37115980 - 37115886
Alignment:
Q  73 gagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||| ||| |||||||||||||||||||||    
T  37115980 gagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcgcaatagttatcattttatatgttttagttttagtcct 37115886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 46487271 - 46487358
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||||||||||    
T  46487271 tgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcacaatagttatcattttatatgttttagttttagtcc 46487358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 29360472 - 29360571
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||| ||||| ||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||||||    
T  29360472 aattaagagcctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcacagtagttatccttttacatgttttagttttagtcc 29360571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 52742345 - 52742442
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||| ||| | || ||||||||||| ||||    
T  52742345 ttagagcctgtttgaaatagtttttgtttccagtttttgaaatatacaaattctcttatcgcaatagttatcattttacatattttagttttaatcct 52742442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 3618415 - 3618340
Alignment:
Q  91 ttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcacaatatttatctttttacatgttttagttttagtcc 3618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 16353566 - 16353494
Alignment:
Q  89 gtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| | |||||||||||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatccttttacatgttttagtttt 16353494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 14201710 - 14201798
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttt 160  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||| |||||||||||||  ||| | ||||||||||||    
T  14201710 ttagagcctgtttgaaatagtttttgttttcagtttttgaaatat--aagtcctcttttcacaatagttattcttttacatgttttagttt 14201798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 48944191 - 48944105
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||| |||| || ||||||||||||||||| ||||||| |||||||||||| ||| | ||||||| ||||||||||    
T  48944191 tttgaaatagtttttctttttagcttttgaaatatacaagtcctcttcttacaatagttatcattttacatgtttttgttttagtcc 48944105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 54883065 - 54882992
Alignment:
Q  93 ttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||| |||||||||||||| |||| |||||||||||||| ||||| ||| |  |||||||||||||||||    
T  54883065 ttgttttcggtttttgaaatatagaagtcctcttctcacaatatttatccttttacgtgttttagttttagtcc 54882992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 47599389 - 47599452
Alignment:
Q  102 gtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    |||||| |||||||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  47599389 gtttttaaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagtc 47599452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 48644538 - 48644608
Alignment:
Q  94 tgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    |||||||| |||||||||||||||| |  ||||||||||||| ||||| ||| | ||||||||||||||||    
T  48644538 tgttttcaatttttgaaatatacaaatcatcttctcacaatatttatcattttacatgttttagttttagt 48644608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 41998975 - 41998881
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||    
T  41998975 ttagagcctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcacaatatttatctttttatatgttttagttttagt 41998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 6750404 - 6750309
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||||||||| | |||||||||||||||||||    
T  6750404 agagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatccctttttcacaatagttatctttttacatgttttagttttagtcct 6750309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 18808781 - 18808867
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||    
T  18808781 tttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcacaatagttatccttttatatgttttagttttagtcc 18808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 794904 - 794997
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||| | |||||||||||||    
T  794904 atttagggcatgtttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcacaatagttatccttttacatgttttagtttt 794997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 24909606 - 24909510
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||| | || |||| ||||||||    
T  24909606 atttagagcctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcacaatagttatccttttacatattttcgttttagt 24909510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 39001948 - 39002036
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||| ||| | ||||||||||||||||||    
T  39001948 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttgcaatagttatccttttacatgttttagttttagtcc 39002036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 11121865 - 11121946
Alignment:
Q  85 aatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||| | ||||||||||||||||||    
T  11121865 aatagtttttgttttcagtttttgaaatatacaagtcatcttcgcacaatagttatcattttacatgttttagttttagtcc 11121946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 3695407 - 3695495
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| ||| |||||||||| ||| | ||||||||||||||||||    
T  3695407 tgtttgaaatagtttttgttttcggtttttgaaatatacaagtccccttttcataatagttatcattttacatgttttagttttagtcc 3695495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 4792656 - 4792593
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatc 141  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4792656 tgtttaaaatagtttttgtttttagtttttgaaatatacaagttctcttctcacaatagttatc 4792593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 571650 - 571731
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    |||||||||||||||||||||||||||||||||||| | || ||||||||| |||||||||| ||| | |||||||||||||    
T  571650 tttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctcataatagttatcattttacatgttttagtttt 571731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 26654028 - 26653945
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||| ||| | |||||||| ||||    
T  26654028 tgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcacaatggttatccttttacatgttttaatttt 26653945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 44272452 - 44272362
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagt-ttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||  ||| | |||||||||||||    
T  44272452 agagcttgtttgaaatagtttttgttttcagttttttgaaatatacaagttctcttttcataatggttattattttacatgttttagtttt 44272362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 1585853 - 1585938
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgtttt 155  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||||| ||| | |||||||    
T  1585853 ttagagcctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttcttacaatagttatccttttacatgtttt 1585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 36290612 - 36290680
Alignment:
Q  98 ttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||    
T  36290612 ttcagtttttgaaatatacaagtcctcttctgacaatagttatcattttacatgttttagttttagtcc 36290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 7409885 - 7409823
Alignment:
Q  104 ttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||  ||||||||||||| |||||||||| ||| | ||||||||||||||||||    
T  7409885 ttttgaaatataatagttctcttctcataatagttatccttttacatgttttagttttagtcc 7409823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 9224912 - 9224863
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttc 127  Q
    |||||||||||||||||||||||||||||||||||| |||| || |||||    
T  9224912 tgtttgaaatagtttttgttttcagtttttgaaatacacaaattttcttc 9224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 4623948 - 4623849
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||| | |||||||||||||||||||    
T  4623948 atttagagactgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcacaatagttatccttttacatgttttagttttagtcct 4623849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 23403591 - 23403682
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||    
T  23403591 ttagagcctatttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagtttt 23403682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 30204744 - 30204649
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| | |||||||||||||||||    
T  30204744 ttagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtc 30204649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 39436844 - 39436930
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  39436844 tttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttatttttttatatgttttagttttagtcc 39436930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 22798532 - 22798605
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatc 141  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22798532 atttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatc 22798605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 21567708 - 21567796
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||| | ||||||||||||||||||    
T  21567708 tgtttgaaatagtttttgttttcagttttagaaatatacaaatcctcttcttacaatagttatctttttacatgttttagttttagtcc 21567796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 3001465 - 3001382
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||    
T  3001465 tgtttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcacaatggttatctttttacatgttttagtttt 3001382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 16655973 - 16656068
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||| ||| | |||||||||||||||||||    
T  16655973 agagcctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcacaatagttatcattttacatgttttagttttagtcct 16656068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 14842303 - 14842393
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| | || |||||||||||    
T  14842303 agagcatgtttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatcattttacatattttagtttta 14842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 41787494 - 41787584
Alignment:
Q  75 gcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    |||||||| |||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| | |||||||||||||||||    
T  41787494 gcatgtttaaaatagtttttgttttcagtttttaaaatatataaattctcttcttacaatagttatctttttacatgttttagttttagtc 41787584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 37629993 - 37630092
Alignment:
Q  68 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| |||  |||||||| ||||||||| | ||| | |||||||||||||||||||    
T  37629993 atttagagcctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctcgcaatagttagccttttacatgttttagttttagtcct 37630092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 36470222 - 36470135
Alignment:
Q  80 tttgaaatagtttttgtttt-cagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||||||||||    
T  36470222 tttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtcc 36470135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 4234173 - 4234266
Alignment:
Q  72 agagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtc 165  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| | ||| | |||||||||||| ||||    
T  4234173 agagcctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcgcaatagttagccttttacatgttttagtttgagtc 4234266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 29958613 - 29958513
Alignment:
Q  67 aatttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    |||||||||| | ||| ||||| |||||||||||||||||||||||||||||||  |||| | |||||||||||| ||| | |||||||||||||| |||    
T  29958613 aatttagagcctctttaaaataatttttgttttcagtttttgaaatatacaagtcatcttattacaatagttatccttttacatgttttagttttaatcc 29958514  T
Q  167 t 167  Q
    |    
T  29958513 t 29958513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 23275623 - 23275532
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttt 161  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| | ||  |||||||  ||| | |||||||||||||    
T  23275623 ttagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttacggtagttattcttttacatgttttagtttt 23275532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 45310103 - 45310041
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttat 140  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||    
T  45310103 tgtttgaaatagtttttgttttcaatttttgaaatatacaagttctcttttcataatggttat 45310041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 36046614 - 36046533
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagtttta 162  Q
    ||||||||||||||||||| ||||||||||||||||||| |   ||| |||||||||||||| ||| | ||||||||||||||    
T  36046614 tttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcacaatagttatccttttacatgttttagtttta 36046533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 4414227 - 4414267
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4414227 tgtttgaaatagtttttgttttcagtttttgaaatatacaa 4414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 18599 - 18502
Alignment:
Q  70 ttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||| ||| | |||||||||||||||||||    
T  18599 ttagagcctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtcct 18502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 11320 - 11408
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||||| ||||||||||    
T  11320 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcagagtagttatcctttaacatgtttttgttttagtcc 11408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 67868 - 67959
Alignment:
Q  73 gagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagt 164  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||| | ||||||||||||||||    
T  67868 gagcctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttctaacaatagttatccttttacatgttttagttttagt 67959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 37489 - 37403
Alignment:
Q  80 tttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||| | || |||||||||||||||    
T  37489 tttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctcgcaatagttatcattttacatattttagttttagtcc 37403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 970 - 1058
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||  |||||||||  ||| |||||||||||||||||||||    
T  970 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcct 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 1343 - 1255
Alignment:
Q  79 gtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcct 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||  |||||||||  ||| |||||||||||||||||||||    
T  1343 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcct 1255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 21477 - 21565
Alignment:
Q  78 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcttttcatatgttttagttttagtcc 166  Q
    ||||||||| |||||||||||||||||||||||||||| || |  ||||||||||||||||||  ||| | ||||||||||||||||||    
T  21477 tgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcacaatagttattattttacatgttttagttttagtcc 21565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University