View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_14 (Length: 338)
Name: NF14035_low_14
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_14 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 46 - 338
Target Start/End: Complemental strand, 34820186 - 34819894
Alignment:
| Q |
46 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttg |
145 |
Q |
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| T |
34820186 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctg |
34820087 |
T |
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| Q |
146 |
agaaaagagttagctgccaagaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctgg |
245 |
Q |
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| T |
34820086 |
agaaaagagttagctgccaagaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgg |
34819987 |
T |
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| Q |
246 |
aagttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatg |
338 |
Q |
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| T |
34819986 |
gagttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatg |
34819894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 34819910 - 34819841
Alignment:
| Q |
46 |
caactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatg |
115 |
Q |
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| T |
34819910 |
caactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatg |
34819841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 34820261 - 34820173
Alignment:
| Q |
247 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggc |
335 |
Q |
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| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggc |
34820173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
247 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
329 |
Q |
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| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
248 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
329 |
Q |
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| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
247 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
323 |
Q |
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| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
123 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
187 |
Q |
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| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
247 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
286 |
Q |
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| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
247 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
329 |
Q |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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