View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_17 (Length: 331)
Name: NF14035_low_17
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 42987079 - 42987344
Alignment:
| Q |
1 |
ttttttaaattctttgtagtatcttggcagaaatcttaatctcatcagcataaagagaatgagtttgagtttgacactcctatgattagctggacattgg |
100 |
Q |
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| T |
42987079 |
ttttttaaattctttttagtatcttggcagaaatcgtaatctcatcagtataaagagaatgagtatgagtttgacactcctatgattagctggacattgg |
42987178 |
T |
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| Q |
101 |
tttcatggatctttggttttcaaaatttattttcaatgaaaatccttaattttaatttttataaatgatatgtgccataatagatatcatttgccaatcg |
200 |
Q |
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| T |
42987179 |
----------------ttttcaaaatttattttcaatgaaaatccttaattttaatttttataaacgatatgtgccataatagatatcatttgccaaccg |
42987262 |
T |
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| Q |
201 |
agattgatctagttgataagtagttgacttatattttacaaagggtgaattcaacctctcttatctttgtttgtaaataaga |
282 |
Q |
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| T |
42987263 |
agattgatctagttgataagtagttgacttatattttacaaagggtgaattcaacctctcttatctttgtttgtaaataaga |
42987344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 35088194 - 35088150
Alignment:
| Q |
113 |
ttggttttcaaaatttattttcaatgaaaatccttaattttaattt |
158 |
Q |
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| T |
35088194 |
ttggttttcaaaatttattttcagtg-aaatcctgaattttaattt |
35088150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 22905349 - 22905311
Alignment:
| Q |
279 |
aagaggcaaaagttggagaattgtggagtattattgatg |
317 |
Q |
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| T |
22905349 |
aagaggcaaaagtcggagaattgtggagtattattgatg |
22905311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 22957017 - 22956979
Alignment:
| Q |
279 |
aagaggcaaaagttggagaattgtggagtattattgatg |
317 |
Q |
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| T |
22957017 |
aagaggcaaaagtcggagaattgtggagtattattgatg |
22956979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 43442107 - 43442071
Alignment:
| Q |
279 |
aagaggcaaaagttggagaattgtggagtattattga |
315 |
Q |
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| T |
43442107 |
aagaggcaaaagtcggagatttgtggagtattattga |
43442071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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