View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_19 (Length: 287)
Name: NF14035_low_19
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 44756490 - 44756758
Alignment:
| Q |
1 |
cccacatgggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaactgggtcaaggtcaatttgggatcacatatcactgca |
100 |
Q |
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| T |
44756490 |
cccacatgggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaactgggtcaaggtcaatttgggatcacatatcactgca |
44756589 |
T |
|
| Q |
101 |
tacacaactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagat |
200 |
Q |
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| T |
44756590 |
tacacaactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagat |
44756689 |
T |
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| Q |
201 |
aatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgt |
269 |
Q |
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| T |
44756690 |
aatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttacgaggattcgttttctgt |
44756758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 44766584 - 44766840
Alignment:
| Q |
2 |
ccacatgggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaactgggtcaaggtcaatttgggatcacatatcactgcat |
101 |
Q |
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| T |
44766584 |
ccacatgggttctccctcgtgtaacaaagaatctccatgaagtttacaccttaggtagaaaactgggtcaaggtcaatttgggatcacatatcactgcac |
44766683 |
T |
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| Q |
102 |
acacaactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagata |
201 |
Q |
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| T |
44766684 |
acacaactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttgtgtaaagaggattatgatgatgcttggagagagattcaaata |
44766783 |
T |
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| Q |
202 |
atgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggat |
258 |
Q |
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| T |
44766784 |
atgcaccatttatccgaacatccaaatgttgtgaggatccgtgaaacatatgaggat |
44766840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 23287803 - 23287536
Alignment:
| Q |
2 |
ccacatgggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaactgggtcaaggtcaatttgggatcacatatcactgcat |
101 |
Q |
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||||| ||||||| ||| ||||||| | ||||| | |||||| ||||||||||| | |||| ||||| ||| ||||||||| ||||||||||||||| |
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| T |
23287803 |
ccacaagggttcttcctcatgtaacaaagaatctccatgaagtctacaccttaggtaaaaaattgggtgaag-tcaatttggtatcacatatcactgctc |
23287705 |
T |
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| Q |
102 |
acacaactcaacg-----ggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattc |
196 |
Q |
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| T |
23287704 |
acacaacgcaacgaaacaggtcgaacctatacgtgcaaatctatatcatagattatactattaagtaaagaggattatgatgatgtttggagagagattc |
23287605 |
T |
|
| Q |
197 |
agataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgtttt |
265 |
Q |
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| T |
23287604 |
aaataatgcaccatttatctgaacatccaaatgtcgtgaggatccacgaaacttatgagtattcgtttt |
23287536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 23256795 - 23256546
Alignment:
| Q |
8 |
gggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaa--ctgggtcaaggtcaatttgggatcacatatcactgcatacac |
105 |
Q |
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||||||||||| ||||||| | | ||| | |||||| ||||||||||| | |||| || ||| ||| ||||||||| |||| |||||| |||| |||| |
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| T |
23256795 |
gggttctccctcatgtaacaaagattctccatgaagtctacaccttaggtaaaaaaaactaggtgaag-tcaatttggtatcatatatcaatgcacacac |
23256697 |
T |
|
| Q |
106 |
aactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagataatgc |
205 |
Q |
| |
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||| |||| | | |||| | ||| ||||| || || ||||||||||| || || |||||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
23256696 |
aacacaacagatcgaacatgcgcatgcaagtctatgtcaaagaagaaactgttccgcaaagaggattatgatgatgtttagagagagattcaaaaaatgc |
23256597 |
T |
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| Q |
206 |
accatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggat |
258 |
Q |
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| T |
23256596 |
accatttatctgaacatccaaatgt--tgaggatccatgaaacttatgaggat |
23256546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 23286803 - 23287005
Alignment:
| Q |
39 |
tgaagtttacaccttaggcagaaaact-gggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctacgcttgcaaatc |
137 |
Q |
| |
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|||||| ||||||||||| | |||| | |||| |||||||||| | |||||| | ||||||| ||||||| |||| ||| |||||||| | ||| || |
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| T |
23286803 |
tgaagtctacaccttaggtaaaaaaattgggtgaaggtcaattcgttatcacaaaccactgcacacacaacacaacaggtcgaacctacaagtacaagtc |
23286902 |
T |
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| Q |
138 |
aatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgagg |
237 |
Q |
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|| ||| ||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||| |
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| T |
23286903 |
tatatcatagaagaaattgttatgcaaagaggattatgatgatgtttggacagagatttagataatgcaccatttatctgaacatccaaatgttgtgagg |
23287002 |
T |
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| Q |
238 |
atc |
240 |
Q |
| |
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||| |
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| T |
23287003 |
atc |
23287005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 23255653 - 23255856
Alignment:
| Q |
39 |
tgaagtttacaccttaggcagaaaact-gggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctacgcttgcaaatc |
137 |
Q |
| |
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|||||| ||||||||||| | |||||| |||| |||||||||| | |||||||||||||||| ||||||| |||| ||| |||||||| ||||| | |
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| T |
23255653 |
tgaagtatacaccttaggtaaaaaacttgggtgaaggtcaattcgttatcacatatcactgcacacacaacacaacaggtcaaacctacgggtgcaagta |
23255752 |
T |
|
| Q |
138 |
aatctcaaagaagaagctt-ttatgcaaagaggattatgatgatgtttggagagagattcagataatgcaccatttgtctgaaaatcc-aaatgttgtga |
235 |
Q |
| |
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|| | |||||| || ||| || ||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||| |||| |||||| |
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| T |
23255753 |
tatataaaagaataaacttgttttgccaagaggattatgatgatgtctggagagagatttagataatgcaccatttatctgaacatccaaaatattgtga |
23255852 |
T |
|
| Q |
236 |
ggat |
239 |
Q |
| |
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|||| |
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| T |
23255853 |
ggat |
23255856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 43465366 - 43465197
Alignment:
| Q |
61 |
aaactgggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctacgcttgcaaatcaatctcaaagaagaagcttttat |
160 |
Q |
| |
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||||| || ||||| |||||||||| ||||||| |||| |||||| || || || | | ||| || |||||||||||| | |||| ||||||||| | |
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| T |
43465366 |
aaacttggacaaggacaatttgggacaacatatctatgcacacacaaatccacagggaaactctatgcatgcaaatcaatccctaagaggaagcttttgt |
43465267 |
T |
|
| Q |
161 |
gcaaagaggattatgatgatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgt |
230 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
43465266 |
gtaaggaggattatgatgatgtgtggagagagattcagatcatgcaccatttatctgaacatccaaatgt |
43465197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 39940046 - 39940143
Alignment:
| Q |
127 |
gcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagataatgcaccatttgtctgaaaatcc |
224 |
Q |
| |
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||||||||||||||| |||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
39940046 |
gcttgcaaatcaatcccaaagagaaagcttttctgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcc |
39940143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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