View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_2 (Length: 613)

Name: NF14035_low_2
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_2
NF14035_low_2
[»] chr4 (5 HSPs)
chr4 (11-595)||(56008362-56008946)
chr4 (360-406)||(27131687-27131733)
chr4 (360-406)||(27131021-27131067)
chr4 (360-406)||(32754611-32754657)
chr4 (315-397)||(1678682-1678766)
[»] chr2 (2 HSPs)
chr2 (355-419)||(30289796-30289860)
chr2 (141-239)||(9645131-9645229)
[»] scaffold0001 (1 HSPs)
scaffold0001 (355-397)||(398645-398687)
[»] chr8 (3 HSPs)
chr8 (165-239)||(18948845-18948919)
chr8 (360-398)||(3943757-3943795)
chr8 (360-418)||(11556958-11557016)
[»] chr7 (2 HSPs)
chr7 (360-398)||(2811268-2811306)
chr7 (360-397)||(438693-438730)
[»] chr6 (5 HSPs)
chr6 (360-406)||(2468487-2468533)
chr6 (360-438)||(8013852-8013930)
chr6 (360-406)||(2467821-2467867)
chr6 (319-392)||(32862728-32862803)
chr6 (359-395)||(34406440-34406476)
[»] chr3 (7 HSPs)
chr3 (357-399)||(15802351-15802393)
chr3 (362-398)||(28286906-28286942)
chr3 (355-402)||(37817263-37817310)
chr3 (355-420)||(3014913-3014978)
chr3 (361-406)||(17105261-17105306)
chr3 (355-396)||(35724224-35724265)
chr3 (364-432)||(27020404-27020472)
[»] chr5 (1 HSPs)
chr5 (362-406)||(42233186-42233230)
[»] chr1 (2 HSPs)
chr1 (340-421)||(16567278-16567361)
chr1 (362-398)||(31157469-31157505)


Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 11 - 595
Target Start/End: Original strand, 56008362 - 56008946
Alignment:
Q  11 cacagacatgaatttaaaccagttcaatgctgaaagtgaagcagcagaaatcaaaacaattgttgatgtgaatgaagacttccaaagcaagaaaccaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008362 cacagacatgaatttaaaccagttcaatgctgaaagtgaagcagcagaaatcaaaacaattgttgatgtgaatgaagacttccaaagcaagaaaccaaat 56008461  T
Q  111 gactcgtgcagtgacgatttggtgtcagattttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggt 210  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008462 tactcgtgcagtgacgatttggtgtcaggttttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggt 56008561  T
Q  211 tgcaagctaaagatgaagaaattaaggtaatagtgactgttgtgccccactttgactagctatgtatcaccgacacttgagatagatggcatatccggtg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008562 tgcaagctaaagatgaagaaattaaggtaatagtgactgttgtgccccactttgactagctatgtatcaccgacacttgagatagatggcatatccggtg 56008661  T
Q  311 tcaatgtctgacacgtgtcagtatcagaaaccaacacgatcctgacacatggttacattcaattactttaattttcttaaattattaccagtgtcttcag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  56008662 tcaatgtctgacacgtgtcagtatcagaaaccaacacgatcctgacacatggttacattcaattactttaattttcttaaattgttaccagtgtcttcag 56008761  T
Q  411 gttagtgtcaacgtcgtgtttggtgtctgtatatgtgtctgcgttaatgtttcacagtctacaagtaggatctctccattttaaaaaagaaatagatgag 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008762 gttagtgtcaacgtcgtgtttggtgtctgtatatgtgtctgcgttaatgtttcacagtctacaagtaggatctctccattttaaaaaagaaatagatgag 56008861  T
Q  511 ttcgttactgtagttttaggtacataaaacacacatttcataaacttgtgacataattatacactaattatactatgatcgtctc 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008862 ttcgttactgtagttttaggtacataaaacacacatttcataaacttgtgacataattatacactaattatactatgatcgtctc 56008946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 27131687 - 27131733
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  27131687 tggttacattcaattacttccattttcttaaattattaccaatgtct 27131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 27131021 - 27131067
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    |||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  27131021 tggttacactcaattactttcattgtcttaaattattaccaatgtct 27131067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 32754657 - 32754611
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  32754657 tggttacattcaatcactttcattttcttaaactattacaagtgtct 32754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 1678766 - 1678682
Alignment:
Q  315 tgtctgacacgtgtcagtatcagaaaccaacacgatcctgacacatg--gttacattcaattactttaattttcttaaattatta 397  Q
    ||||| ||||||||| || ||||||||||||| ||| |  |||||||  |||||||| ||| ||||| ||||||| |||||||||    
T  1678766 tgtctaacacgtgtcggtgtcagaaaccaacaagataccaacacatgtagttacatttaatcactttcattttctcaaattatta 1678682  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 30289860 - 30289796
Alignment:
Q  355 acacatggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtc 419  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||| || || ||||||    
T  30289860 acacatggttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtc 30289796  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 9645131 - 9645229
Alignment:
Q  141 tttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaagatgaagaaattaaggta 239  Q
    ||||| ||||||| ||| |||| ||| ||||| || |||| |||| |||||||||| ||||||||||   ||||  | |||||||||||||| ||||||    
T  9645131 tttttatatgataagcttcaaaaagaagtcatcaatttgaagaagacttgtgaaacaaaagacagtactctgcacaccaaagatgaagaaataaaggta 9645229  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 398687 - 398645
Alignment:
Q  355 acacatggttacattcaattactttaattttcttaaattatta 397  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  398687 acacgtggttacattcaattacttcaattttcttaaattatta 398645  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 18948919 - 18948845
Alignment:
Q  165 gaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaagatgaagaaattaaggta 239  Q
    |||||||| |||||||||||| |||||  ||||||||||||||| ||| | |||||| |||| |||| |||||||    
T  18948919 gaggtcatcaaattgaggaagccttgtagaaccaaagacagtagtttgaatgctaaatatgatgaaactaaggta 18948845  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 3943795 - 3943757
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattac 398  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  3943795 tggttacattcaatcacttttattttcttaaattattac 3943757  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 11556958 - 11557016
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgt 418  Q
    |||||||||||||| |||| |||||||| ||||||||||  |||||| || ||||||||    
T  11556958 tggttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgt 11557016  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 2811306 - 2811268
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattac 398  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2811306 tggttacattcaattacttttattttcttaaattattac 2811268  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 438693 - 438730
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattatta 397  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  438693 tggttacatttaattacttcaattttcttaaattatta 438730  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 2468487 - 2468533
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  2468487 tggttacattcaattacttccattttcttaaattattaccaatgtct 2468533  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 8013852 - 8013930
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaacgtcgtgtttggtgtct 438  Q
    |||||||||||||| ||||  ||||| | |||||||||| ||||||| || |||||| |||  ||||||||||||||||    
T  8013852 tggttacattcaatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttggtgtct 8013930  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 2467821 - 2467867
Alignment:
Q  360 tggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    |||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  2467821 tggttacactcaattactttcattgtcttaaattattaccaatgtct 2467867  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 32862728 - 32862803
Alignment:
Q  319 tgacacgtgtcagtatcagaaaccaacacgatcctgacaca--tggttacattcaattactttaattttcttaaat 392  Q
    ||||||||||| | || |||  |||||| ||| ||||||||  |||||||||||||| ||||| ||||||||||||    
T  32862728 tgacacgtgtcggcattagacgccaacaagatactgacacacgtggttacattcaatcactttcattttcttaaat 32862803  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 34406476 - 34406440
Alignment:
Q  359 atggttacattcaattactttaattttcttaaattat 395  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34406476 atggttacattcaatcactttcattttcttaaattat 34406440  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 15802393 - 15802351
Alignment:
Q  357 acatggttacattcaattactttaattttcttaaattattacc 399  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  15802393 acatggttacattcaattacttaaattttctcaaattattacc 15802351  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  362 gttacattcaattactttaattttcttaaattattac 398  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 37817310 - 37817263
Alignment:
Q  355 acacatggttacattcaattactttaattttcttaaattattaccagt 402  Q
    ||||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  37817310 acacatgattacattcaattactttcattttttaaaattattaccagt 37817263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 3014978 - 3014913
Alignment:
Q  355 acacatggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtca 420  Q
    |||||| |||||||||||| | ||||||||| | |||||||||| ||||||| |  ||||||||||    
T  3014978 acacattgttacattcaatcaatttaattttttaaaattattacaagtgtctacgtgttagtgtca 3014913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 17105306 - 17105261
Alignment:
Q  361 ggttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||||    
T  17105306 ggttacattcaatcacttttattttcttaaattattattagtgtct 17105261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 35724265 - 35724224
Alignment:
Q  355 acacatggttacattcaattactttaattttcttaaattatt 396  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  35724265 acacatgtttacattcaattactttcattttctcaaattatt 35724224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 27020472 - 27020404
Alignment:
Q  364 tacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaacgtcgtgtttg 432  Q
    |||||||||||||||| ||||||| ||| ||||||| |||| | || || ||| |||| ||||||||||    
T  27020472 tacattcaattactttcattttctaaaaatattaccggtgtgtacatgtcagtatcaatgtcgtgtttg 27020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 42233186 - 42233230
Alignment:
Q  362 gttacattcaattactttaattttcttaaattattaccagtgtct 406  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  42233186 gttacatttgattactttaattttcttaaactattaccagtgtct 42233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 16567361 - 16567278
Alignment:
Q  340 accaacacgatcctgacacatg--gttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaa 421  Q
    ||||||||||| ||||||||||  |||||||||||| | ||  |||||||||||||||| |  |||||| || || ||||||||    
T  16567361 accaacacgatactgacacatgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtcagtgtcaa 16567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 31157469 - 31157505
Alignment:
Q  362 gttacattcaattactttaattttcttaaattattac 398  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  31157469 gttacattcaattactttagttttcttcaattattac 31157505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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