View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_20 (Length: 259)
Name: NF14035_low_20
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 52953514 - 52953764
Alignment:
| Q |
1 |
cctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgtta |
100 |
Q |
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| T |
52953514 |
cctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgtta |
52953613 |
T |
|
| Q |
101 |
attggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52953614 |
attggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatggatatgagaa |
52953713 |
T |
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| Q |
201 |
tcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
251 |
Q |
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| T |
52953714 |
tcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
52953764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 31904009 - 31903762
Alignment:
| Q |
4 |
agaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaatt |
103 |
Q |
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| T |
31904009 |
agaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaatt |
31903910 |
T |
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| Q |
104 |
ggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatca |
203 |
Q |
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| T |
31903909 |
ggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatca |
31903810 |
T |
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| Q |
204 |
aaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
251 |
Q |
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| T |
31903809 |
aaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
31903762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 31673573 - 31673777
Alignment:
| Q |
47 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
146 |
Q |
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| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
|
| Q |
147 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgat |
246 |
Q |
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| T |
31673673 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgct |
31673772 |
T |
|
| Q |
247 |
gatgt |
251 |
Q |
| |
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||||| |
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| T |
31673773 |
gatgt |
31673777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 31922101 - 31921942
Alignment:
| Q |
47 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
146 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
|
| Q |
147 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaag |
206 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31922001 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaag |
31921942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 7760454 - 7760638
Alignment:
| Q |
70 |
ctttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgc |
169 |
Q |
| |
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|||||||||||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |
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| T |
7760454 |
ctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgtta |
7760553 |
T |
|
| Q |
170 |
attgctttgatttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
251 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||| || ||||| ||||| | |||||| ||||||||| | ||||||||||| |
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| T |
7760554 |
attgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgt |
7760638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 28959879 - 28960052
Alignment:
| Q |
81 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgat |
180 |
Q |
| |
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|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |||| |||||| |
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| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgat |
28959978 |
T |
|
| Q |
181 |
ttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
251 |
Q |
| |
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||||||| ||| |||||||||| || ||||| ||||| | |||||| ||||||||| | ||||||||||| |
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| T |
28959979 |
ttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgt |
28960052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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