View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_23 (Length: 248)
Name: NF14035_low_23
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 47182792 - 47183015
Alignment:
| Q |
10 |
catcatcacgcaacgatgctttaaccctcttcatcatgtgattataaagcactttacccctttcccattcacttatattggtgccaccaattgcacatgg |
109 |
Q |
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| T |
47182792 |
catcatcacgcaacgatgctttaaccctcttcatcatgtggttataaagcactttacccctttcccattcacttatattggtgccaccaattgcacatgg |
47182891 |
T |
|
| Q |
110 |
gaccaaccccaccaaaccaagtcccgagnnnnnnnccagcacatgtttcgcaaatgccatacctggtccaaccccatttgtctttagcgtatctatgtct |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47182892 |
gaccaaccccaccaaaccaagtcccgagtttttttccagcacatgtttcgcaaatgccatacctggtccaaccccatttgtctttagcgtatctatgtct |
47182991 |
T |
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| Q |
210 |
tcatgaagaggttcatgtgcttca |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
47182992 |
tcatgaagaggttcatgtgcttca |
47183015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 10567687 - 10567910
Alignment:
| Q |
10 |
catcatcacgcaacgatgctttaaccctcttcatcatgtgattataaagcactttacccctttcccattcacttatattggtgccaccaattgcacatgg |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
10567687 |
catcatcaagcaacgatgctttaaccctcttcatcatgttcttataaagcacttttcccctttcccattcactaatattggtaccacccgttgcacatgg |
10567786 |
T |
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| Q |
110 |
gaccaaccccaccaaaccaagtcccgagnnnnnnnccagcacatgtttcgcaaatgccatacctggtccaaccccatttgtctttagcgtatctatgtct |
209 |
Q |
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|||||||| |||||||||| |||| || ||| |||||| || ||||| |||| |||||||||| ||||||||| ||||| |||||||||||| |
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| T |
10567787 |
aaccaaccctaccaaaccaaatcccaagtttttttccaacacatgatttgcaaacaccattcctggtccaatcccatttgtttttagagtatctatgtct |
10567886 |
T |
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| Q |
210 |
tcatgaagaggttcatgtgcttca |
233 |
Q |
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|||||||| ||||| ||||||||| |
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| T |
10567887 |
tcatgaagtggttcttgtgcttca |
10567910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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