View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14035_low_24 (Length: 243)
Name: NF14035_low_24
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_24 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 44756275 - 44756497
Alignment:
| Q |
9 |
atatatcagtaaatagaaaatcacggaatttgatttaattcttttcattaaattattgtcattattacttgtgtaataagcatatgaacattaataagtg |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
44756275 |
atatatcagcaaatagaaaatcacggaatttgatttaattcttttcattaaatttttgtcattattacttgtgtaataagcata------------agtg |
44756362 |
T |
|
| Q |
109 |
aagtcacaaacatttgactctgtctttgtctttgtgtcttctttctctctttctgaaccaaacaccaaacacagtacaacgttgaagaatgtcgaaatcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44756363 |
aagtcacaaacatttgactctgtctttgtctttgtgtcttctttttctctttctgaaccaaacaccaaacacagtacaacgttgaagaatgtcgaaatcc |
44756462 |
T |
|
| Q |
209 |
aacaccaccaacacaacaccaccaaaacccacatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44756463 |
aacaccaccaacacaacaccaccaaaacccacatg |
44756497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University