View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_25 (Length: 240)

Name: NF14035_low_25
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_25
NF14035_low_25
[»] chr8 (3 HSPs)
chr8 (1-240)||(31444880-31445119)
chr8 (1-240)||(31430559-31430798)
chr8 (1-240)||(31434685-31434924)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31445119 - 31444880
Alignment:
Q  1 cataggtaattggcttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccga 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||    
T  31445119 cataggtaattggcttaagcaaatggcctttgattgtagcaatccaagttatcaccggtagtcgttctcaacaattgacaatatcttttataaaacccga 31445020  T
Q  101 ttcggtcttcgacccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacct 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31445019 tccggtcttcgacccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctccttgctgacct 31444920  T
Q  201 gtcagcatcagatggcgtccatcttccagtaatcacatca 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31444919 gtcagcatcagatggcgtccatcttccagtaatcacatca 31444880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31430798 - 31430559
Alignment:
Q  1 cataggtaattggcttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccga 100  Q
    |||||||| || ||||| |||||||| ||||| ||||  |||||||||||||| ||||   ||  |||||| | ||||||||| ||| || |||| ||||    
T  31430798 cataggtacttcgcttaggcaaatggcctttggttgttacaatccaagttattgccggggttcactcccaatatttgacaataccttctataaaatccga 31430699  T
Q  101 ttcggtcttcgacccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacct 200  Q
      || || |||||   ||||||||||||| | || ||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| ||    
T  31430698 cccgatcctcgactttaggatcctgaccgtgcccgcattcgagcccgccgttgattatgttggtgatcacgccgtatccggggacccgccctgctgagct 31430599  T
Q  201 gtcagcatcagatggcgtccatcttccagtaatcacatca 240  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  31430598 gtcagcagcagatggcgtccatcttccggtaatcacatca 31430559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31434924 - 31434685
Alignment:
Q  1 cataggtaattggcttaagcaaatggtctttgattgtagcaatccaagttattaccggtagtcgttcccaacaattgacaatatcttttaaaaaacccga 100  Q
    ||||||||| | ||||||||||||| |||||| |||| |||||||||||||| ||| | | ||  |||||| | ||||||||| ||| || |||||||||    
T  31434924 cataggtaactcgcttaagcaaatgatctttggttgttgcaatccaagttatcaccaggactcactcccaatatttgacaataccttctataaaacccga 31434825  T
Q  101 ttcggtcttcgacccgaggatcctgaccgcgtccacattcaagcccgccgttgattatgttggtgatcacgccatatccgggtaccctcccagctgacct 200  Q
    | || || |  || |||| |||||| ||  | || ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||  || ||||||||    
T  31434824 tccgatcattaactcgagcatcctgtccatgcccgcattcgagcccaccgttgattatgttggtgatcacgccgtatccggggacccgtccggctgacct 31434725  T
Q  201 gtcagcatcagatggcgtccatcttccagtaatcacatca 240  Q
    ||| ||| | |||||||||||||||||| |||||||||||    
T  31434724 gtctgcacccgatggcgtccatcttccaataatcacatca 31434685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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