View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14035_low_26 (Length: 239)
Name: NF14035_low_26
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_26 |
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| [»] scaffold0557 (2 HSPs) |
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| [»] scaffold0115 (2 HSPs) |
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| [»] scaffold0442 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20922160 - 20921940
Alignment:
| Q |
1 |
taatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20922160 |
taatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactg |
20922061 |
T |
|
| Q |
101 |
gcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagtctacactagg |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
20922060 |
gcattgaattactcatcattgaggtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacctgaggatgcaagtttacactagg |
20921961 |
T |
|
| Q |
201 |
agttggacccatagtactcat |
221 |
Q |
| |
|
||||||| ||||||||||||| |
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|
| T |
20921960 |
agttggaaccatagtactcat |
20921940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 20903557 - 20903334
Alignment:
| Q |
4 |
tagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactggca |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
20903557 |
tagctatttggacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatcctggagttgcaaccatgttcataactggca |
20903458 |
T |
|
| Q |
104 |
ttgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagtct------acact |
197 |
Q |
| |
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||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
20903457 |
ttggagtactcatcattgtagtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacacc |
20903358 |
T |
|
| Q |
198 |
aggagttggacccatagtactcat |
221 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
20903357 |
aggagttggaaccatagtactcat |
20903334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 21006273 - 21006050
Alignment:
| Q |
4 |
tagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactggca |
103 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| | |
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|
| T |
21006273 |
tagctatttgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggta |
21006174 |
T |
|
| Q |
104 |
ttgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttgaggatgca------agtctacact |
197 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||| |||| | | ||||| |
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| T |
21006173 |
ttgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacact |
21006074 |
T |
|
| Q |
198 |
aggagttggacccatagtactcat |
221 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
21006073 |
aggagttggaaccatagtactcat |
21006050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41336718 - 41336492
Alignment:
| Q |
1 |
taatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
41336718 |
taatagctatctgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactg |
41336619 |
T |
|
| Q |
101 |
gcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagtct------ac |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
41336618 |
gcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaac |
41336519 |
T |
|
| Q |
195 |
actaggagttggacccatagtactcat |
221 |
Q |
| |
|
|| |||||||||| ||||||||||||| |
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| T |
41336518 |
accaggagttggaaccatagtactcat |
41336492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 5329 - 5225
Alignment:
| Q |
77 |
gagtggcaaccatgttcataactggcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagac |
176 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
5329 |
gagttgcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagac |
5230 |
T |
|
| Q |
177 |
ttgag |
181 |
Q |
| |
|
||||| |
|
|
| T |
5229 |
ttgag |
5225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 5728 - 5826
Alignment:
| Q |
82 |
gcaaccatgttcataactggcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttga |
180 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
5728 |
gcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttga |
5826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 47182 - 47078
Alignment:
| Q |
77 |
gagtggcaaccatgttcataactggcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagac |
176 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| || ||||||||||||| || ||||||||||||||| |
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|
| T |
47182 |
gagttgcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagac |
47083 |
T |
|
| Q |
177 |
ttgag |
181 |
Q |
| |
|
||||| |
|
|
| T |
47082 |
ttgag |
47078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 47840 - 47939
Alignment:
| Q |
82 |
gcaaccatgttcataactggcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttgag |
181 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
47840 |
gcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgag |
47939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 2589646 - 2589504
Alignment:
| Q |
6 |
gctatttgcacccccttgttgcgcatagaaattttgatccatttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactggcatt |
105 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || ||||||||| | |||||||||||||||||||| ||||| | || |||||| ||||||||| |
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|
| T |
2589646 |
gctatttgcatccccttgttgatcatagaaattctgctccatttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaa |
2589547 |
T |
|
| Q |
106 |
gaattactcatcattgaagtattcatcatggtgtttctcttct |
148 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||| | ||||||| |
|
|
| T |
2589546 |
gaagtacttatcatggaagtattcatcatggtgctgctcttct |
2589504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 8694 - 8590
Alignment:
| Q |
77 |
gagtggcaaccatgttcataactggcattgaattactcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagac |
176 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| || ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
8694 |
gagttgcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagac |
8595 |
T |
|
| Q |
177 |
ttgag |
181 |
Q |
| |
|
||||| |
|
|
| T |
8594 |
ttgag |
8590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 9153 - 9220
Alignment:
| Q |
113 |
tcatcattgaagtattcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacttga |
180 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9153 |
tcatcgttgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttga |
9220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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