View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_3 (Length: 553)

Name: NF14035_low_3
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_3
NF14035_low_3
[»] chr6 (4 HSPs)
chr6 (10-378)||(33050800-33051168)
chr6 (272-415)||(33032427-33032569)
chr6 (10-118)||(33032816-33032926)
chr6 (284-384)||(33032186-33032285)
[»] chr1 (4 HSPs)
chr1 (271-459)||(38903799-38903987)
chr1 (284-384)||(38903516-38903615)
chr1 (282-401)||(38904194-38904312)
chr1 (10-70)||(9901039-9901098)
[»] chr8 (2 HSPs)
chr8 (284-385)||(43522007-43522107)
chr8 (345-390)||(43522193-43522238)
[»] chr4 (4 HSPs)
chr4 (284-401)||(53017180-53017295)
chr4 (10-91)||(8264038-8264119)
chr4 (10-91)||(8277456-8277537)
chr4 (309-385)||(53017405-53017480)
[»] chr7 (1 HSPs)
chr7 (10-85)||(7975171-7975245)
[»] chr5 (1 HSPs)
chr5 (10-85)||(13838165-13838239)
[»] chr3 (1 HSPs)
chr3 (10-85)||(1293818-1293892)
[»] chr2 (1 HSPs)
chr2 (10-85)||(26543722-26543796)


Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 33051168 - 33050800
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051168 aatattgggtatgagaaaattatcagcattgaaacatgagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca 33051069  T
Q  110 tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051068 tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac 33050969  T
Q  210 ataaagacactaaattaaatccaacttggatatacctaagaaacattggtaaaattacagaagaataatttgacctcaggcatccaaggaaggatagagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050968 ataaagacactaaattaaatccaacttggatatacctaagaaacattggtaaaattacagaagaataatttgacctcaggcatccaaggaaggatagagc 33050869  T
Q  310 agcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050868 agcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 33050800  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 272 - 415
Target Start/End: Complemental strand, 33032569 - 33032427
Alignment:
Q  272 gaataatttgacctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 371  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33032569 gaataattagacctcagacatccaaggaaggatacagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 33032470  T
Q  372 agaaacaagccttatgatttatcatcattggtcattaacaatca 415  Q
    ||||||||||||||  | |||||||||||||||||| |||||||    
T  33032469 agaaacaagccttaata-ttatcatcattggtcatttacaatca 33032427  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 33032926 - 33032816
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatac--atttcaaagtaa 107  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  | |||| |||||    
T  33032926 aataatgggtatgagaaaattatcagcacggaaacatcagagtggtgcatgactatctctatgactcatcatagccaataaaatacaaaattcagagtaa 33032827  T
Q  108 catgtaattga 118  Q
     ||||||||||    
T  33032826 tatgtaattga 33032816  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 33032285 - 33032186
Alignment:
Q  284 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 383  Q
    ||||| |||||||||||||||| | |||||| |||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33032285 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 33032187  T

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Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 459
Target Start/End: Complemental strand, 38903987 - 38903799
Alignment:
Q  271 agaataatttgacctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgtttt 370  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  38903987 agaataatttgacctcagacatccaaggaaggaaatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgtttt 38903888  T
Q  371 gagaaacaagccttatgatttatcatcattggtcattaacaatcatatgaac-acacatcaaacattgtcgttgttcaatttacatgaac 459  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||| || ||| | |||||||| |||||| |||||||||||||||||||    
T  38903887 gagaaacaagcctta-gatttatcatcattggtcatttataatcaaataaacaaaacatcaaaaattgtcattgttcaatttacatgaac 38903799  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 38903615 - 38903516
Alignment:
Q  284 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 383  Q
    ||||| |||||||||||||||| | ||||| || |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903615 ctcagacatccaaggaaggataaaacagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 38903517  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 282 - 401
Target Start/End: Complemental strand, 38904312 - 38904194
Alignment:
Q  282 acctcaggcatccaaggaaggatag-agcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaag 380  Q
    ||||||| |||||||||||||| || | | |||||| |||||||||  |||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  38904312 acctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaa-ggcgaaagctattaggcagccactgcgaatgttttgagaaacaag 38904214  T
Q  381 ccttatgatttatcatcattg 401  Q
    ||||| |||||||||||||||    
T  38904213 cctta-gatttatcatcattg 38904194  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 9901039 - 9901098
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctcta 70  Q
    |||| |||||||||||||||||||||||  | || ||||||||||||||||||||||||||    
T  9901039 aataatgggtatgagaaaattatcagcacaggaa-atcagagtggtgcatgactatctcta 9901098  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 43522107 - 43522007
Alignment:
Q  284 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 383  Q
    ||||| |||||||||||||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  43522107 ctcagacatccaaggaaggataaagcagcattaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 43522009  T
Q  384 ta 385  Q
    ||    
T  43522008 ta 43522007  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 43522238 - 43522193
Alignment:
Q  345 tcttaggcggccactgcgaatgttttgagaaacaagccttatgatt 390  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  43522238 tcttaggcggccaatgcgaatgttttgagaaacaagccttaggatt 43522193  T

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Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 53017180 - 53017295
Alignment:
Q  284 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 383  Q
    ||||| |||||||||||||||| ||||||| || |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53017180 ctcagacatccaaggaaggataaagcagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 53017278  T
Q  384 tatgatttatcatcattg 401  Q
    | ||  ||||||||||||    
T  53017279 t-tggattatcatcattg 53017295  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 8264119 - 8264038
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa 91  Q
    |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8264119 aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa 8264038  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 8277537 - 8277456
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa 91  Q
    |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8277537 aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa 8277456  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 53017405 - 53017480
Alignment:
Q  309 cagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcctta 385  Q
    |||||||| |||||||||  |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  53017405 cagcattagctctcaagcctggcgaa-ggcgaaagctcttggtcggccactgcgaatgttttgagaaacaagcctta 53017480  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 7975245 - 7975171
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 85  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  7975245 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 7975171  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 13838165 - 13838239
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 85  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  13838165 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 13838239  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 1293818 - 1293892
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 85  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  1293818 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 1293892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 26543722 - 26543796
Alignment:
Q  10 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 85  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  26543722 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 26543796  T

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