View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14035_low_6 (Length: 496)
Name: NF14035_low_6
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14035_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 45729431 - 45729173
Alignment:
| Q |
1 |
ggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattg |
100 |
Q |
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| T |
45729431 |
ggtttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagattg |
45729332 |
T |
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| Q |
101 |
cgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgagggg |
200 |
Q |
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| T |
45729331 |
cgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgagggg |
45729232 |
T |
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| Q |
201 |
agcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
259 |
Q |
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| T |
45729231 |
agcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
45729173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 45725242 - 45724991
Alignment:
| Q |
1 |
ggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattg |
100 |
Q |
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| T |
45725242 |
ggtttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattg |
45725143 |
T |
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| Q |
101 |
cgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgagggg |
200 |
Q |
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| T |
45725142 |
tgaggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattagggg |
45725043 |
T |
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| Q |
201 |
agcactgcaggtacctagggataatatgagacaatttactacgagaaggaat |
252 |
Q |
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| T |
45725042 |
accaccggagttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 45729107 - 45728951
Alignment:
| Q |
325 |
gtcactactttgatttgtgtaattgctta---ataatgaaacttaatgctcagatatgtaggggctatatatatnnnnnnn--tatttatattcgccata |
419 |
Q |
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| T |
45729107 |
gtcactactttgatttgtgtaattgcttattaataatgaaacttaatgctcagatatgtaggggctatatatataaaaaaaaatatttatattcgccata |
45729008 |
T |
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| Q |
420 |
ttcgttttccatggagaaatggagatattaacctgcaatgacgttgagctagcatatac |
478 |
Q |
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| T |
45729007 |
ttcgttttccatggagaaatggagatatta--ctgcaatgacgttgagctagcatatac |
45728951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 45724924 - 45724870
Alignment:
| Q |
325 |
gtcactactttgatttgtgtaattgcttaataatgaaacttaatgctcagatatg |
379 |
Q |
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| T |
45724924 |
gtcactactttggtttgtgtgattgcttaataatgaaacttaatgctcacatatg |
45724870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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