View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_7 (Length: 454)

Name: NF14035_low_7
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_7
NF14035_low_7
[»] chr7 (3 HSPs)
chr7 (127-444)||(3242089-3242406)
chr7 (16-102)||(3242404-3242490)
chr7 (114-182)||(25511711-25511779)
[»] chr3 (2 HSPs)
chr3 (146-189)||(45432864-45432907)
chr3 (119-159)||(31403448-31403488)
[»] chr8 (1 HSPs)
chr8 (81-179)||(12361243-12361343)
[»] chr4 (1 HSPs)
chr4 (113-182)||(32741189-32741258)
[»] chr5 (1 HSPs)
chr5 (146-182)||(17369319-17369355)
[»] chr1 (1 HSPs)
chr1 (146-182)||(24460319-24460355)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 127 - 444
Target Start/End: Complemental strand, 3242406 - 3242089
Alignment:
Q  127 atagtcttgcaagtacttgtgtcagtagataagttaaaataggtcaatccaaacagaaccttgaagtaattcaaagttcatacacttaccaagttcaggt 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3242406 atagtctcgcaagtacttgtgtcagtagataagttaaaataggtcaatccaaacagaaccttgaagtaattcaaagttcaaacacttaccaagttcaggt 3242307  T
Q  227 gtttcctctacatcacaagatttccttttgaaagaaagcctgaaaatcgtcgaccgctttttgctcggacgattattgaaactaacggatggtgccaacc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  3242306 gtttcctctacatcacaagatttccttttgaaagaaagcctgaaaatcgtcgacagctttttgctcggacgattattgaaactaacggacggtgccaacc 3242207  T
Q  327 gattcaaatttgattttcttgcaatctcttgagcattctcttccacattatttttaccttcttttaaacctttaaagcttccttgatcttttcctaagcg 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3242206 gattcaaatttgattttcttgcaatctcttgagcattctcttccacattatttttaccttcttttaaacctttaaagcttccttgattttttcctaagcg 3242107  T
Q  427 aggaagtccatgagtatt 444  Q
    ||||||||||||||||||    
T  3242106 aggaagtccatgagtatt 3242089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 3242490 - 3242404
Alignment:
Q  16 ataagcacttatagcataagtacttagcataagctatcttcgagagtttatgcagataaggtgttaacagtttatggatatgtcata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242490 ataagcacttatagcataagtacttagcataagctatcttcgagagtttatgcagataaggtgttaacagtttatggatatgtcata 3242404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 25511711 - 25511779
Alignment:
Q  114 taaactctccccaatagtcttgcaagtacttgtgtcagtagataagttaaaataggtcaatccaaacag 182  Q
    ||||||||||| || |||||||||||| | | || | ||||||||||| ||||| ||||||||||||||    
T  25511711 taaactctcccaaacagtcttgcaagttcgtatgcctgtagataagttcaaataagtcaatccaaacag 25511779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 45432907 - 45432864
Alignment:
Q  146 tgtcagtagataagttaaaataggtcaatccaaacagaaccttg 189  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  45432907 tgtcagtagataagttaaaataagtcaatccaaacagacccttg 45432864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 31403448 - 31403488
Alignment:
Q  119 tctccccaatagtcttgcaagtacttgtgtcagtagataag 159  Q
    |||||| ||||||||||||||||||| ||| ||||||||||    
T  31403448 tctcccaaatagtcttgcaagtacttatgttagtagataag 31403488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 12361243 - 12361343
Alignment:
Q  81 aacagtttatggatatgtcataagccatatcaataaa--ctctccccaatagtcttgcaagtacttgtgtcagtagataagttaaaataggtcaatccaa 178  Q
    ||||| ||||||| ||||||||||| || || ||||   ||||| | || |||||  ||||||||| | |||||||||||||| ||||| ||||||||||    
T  12361243 aacagcttatggacatgtcataagctatttctataagatctctctcaaagagtctaacaagtacttatatcagtagataagttcaaataagtcaatccaa 12361342  T
Q  179 a 179  Q
    |    
T  12361343 a 12361343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 32741258 - 32741189
Alignment:
Q  113 ataaactctccccaatagtcttgcaagtacttgtgtcagtagataagttaaaataggtcaatccaaacag 182  Q
    |||| ||||||| |||| |||||||||||||| ||| ||||||||  || ||||| |||||||| |||||    
T  32741258 ataagctctcccaaatattcttgcaagtacttatgttagtagatagctttaaataagtcaatccgaacag 32741189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 17369319 - 17369355
Alignment:
Q  146 tgtcagtagataagttaaaataggtcaatccaaacag 182  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  17369319 tgtcagtagataagttcaaataagtcaatccaaacag 17369355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 24460355 - 24460319
Alignment:
Q  146 tgtcagtagataagttaaaataggtcaatccaaacag 182  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  24460355 tgtcagtagataagttcaaataagtcaatccaaacag 24460319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University