View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14035_low_9 (Length: 435)

Name: NF14035_low_9
Description: NF14035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14035_low_9
NF14035_low_9
[»] scaffold0257 (2 HSPs)
scaffold0257 (185-417)||(16934-17166)
scaffold0257 (38-94)||(16787-16843)
[»] chr3 (16 HSPs)
chr3 (236-417)||(28147198-28147380)
chr3 (214-417)||(28482276-28482476)
chr3 (214-417)||(28511088-28511288)
chr3 (224-339)||(28183391-28183506)
chr3 (252-417)||(17746610-17746774)
chr3 (252-417)||(19047930-19048094)
chr3 (273-417)||(27918045-27918189)
chr3 (273-417)||(28081414-28081560)
chr3 (313-417)||(28131660-28131764)
chr3 (279-417)||(27974226-27974364)
chr3 (303-393)||(28053208-28053298)
chr3 (303-393)||(28063633-28063723)
chr3 (347-433)||(27461455-27461541)
chr3 (274-376)||(27457454-27457556)
chr3 (40-93)||(28521289-28521341)
chr3 (51-87)||(28052299-28052335)
[»] chr2 (1 HSPs)
chr2 (272-324)||(8019573-8019625)


Alignment Details
Target: scaffold0257 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 185 - 417
Target Start/End: Original strand, 16934 - 17166
Alignment:
Q  185 gtgggaagtgtttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 284  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16934 gtgggaagtttttttataatgtaatattgttacagtagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattct 17033  T
Q  285 tattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataac 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  17034 tattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcattgtaaagaataac 17133  T
Q  385 tccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    |||||||||||||||||||||||||||||||||    
T  17134 tccaaagtagaaagtatcttttgtctgaatgaa 17166  T

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Target: scaffold0257; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 16787 - 16843
Alignment:
Q  38 agggaatggaggaaaggatagcagattgaaacacagaagggttggagtgttcaaaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16787 agggaatggaggaaaggatagcagattgaaacacagaagggttggagtgttcaaaat 16843  T

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Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 236 - 417
Target Start/End: Original strand, 28147198 - 28147380
Alignment:
Q  236 tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacat-gtgtttatttcccattcatttattgcagcaatctagtg 334  Q
    |||| ||| ||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||  ||||    
T  28147198 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtg 28147297  T
Q  335 ggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28147298 ggaatgtggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 28147380  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 417
Target Start/End: Complemental strand, 28482476 - 28482276
Alignment:
Q  214 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccatt 312  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||    
T  28482476 ttacagtagtatataaaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccatt 28482381  T
Q  313 catttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctga 412  Q
    ||||||||| || |||| ||||||||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||  | ||||||||||||    
T  28482380 catttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcatggtaaataataactccaaagtagaagatgtcttttgtctga 28482281  T
Q  413 atgaa 417  Q
    |||||    
T  28482280 atgaa 28482276  T

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Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 214 - 417
Target Start/End: Complemental strand, 28511288 - 28511088
Alignment:
Q  214 ttacagtagtatataaaatatctccatag-ctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccatt 312  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||    
T  28511288 ttacagtagtatataaaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccatt 28511193  T
Q  313 catttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctga 412  Q
    ||||||||| || |||| ||||||||||||||||||||||| |||||||||| |||| ||||||  ||||||||||||||| ||  | ||||||||||||    
T  28511192 catttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcttggtaaataataactccaaagtaaaagatgtcttttgtctga 28511093  T
Q  413 atgaa 417  Q
    |||||    
T  28511092 atgaa 28511088  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 28183391 - 28183506
Alignment:
Q  224 atataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgca 323  Q
    |||| ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgcatgtgtttatttcccattcatttattgca 28183490  T
Q  324 gcaatctagtgggaat 339  Q
    | |||  |||||||||    
T  28183491 ggaattgagtgggaat 28183506  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 417
Target Start/End: Complemental strand, 17746774 - 17746610
Alignment:
Q  252 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataatttt 351  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||| |||  |||||| || ||||  |||||    
T  17746774 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacatttt 17746676  T
Q  352 ctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    |  |||||||| | |||||  ||||  || ||||| |||||||||||||| |||||||| ||||||    
T  17746675 cgtgctttggaaacactcaatgtaaacaaaaactctaaagtagaaagtatattttgtctcaatgaa 17746610  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 417
Target Start/End: Complemental strand, 19048094 - 19047930
Alignment:
Q  252 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataatttt 351  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||| |||  |||||| || ||||  |||||    
T  19048094 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacatttt 19047996  T
Q  352 ctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    |  |||||||| | |||||  ||||  || ||||| |||||||||||||| |||||||| ||||||    
T  19047995 cgtgctttggaaacactcaatgtaaacaaaaactctaaagtagaaagtatattttgtctcaatgaa 19047930  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 27918045 - 27918189
Alignment:
Q  273 ctttgttattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatg 372  Q
    |||||||||| |||||||||  ||||||||||||||||||| |||||| ||| | |  ||||||||| | ||  |||||  ||||||||  |||||| ||    
T  27918045 ctttgttattgttattttattaatgtgtttatttcccattcgtttattacaggatttgagtgggaatgtcgagcattttagcgctttgggaagactcgtg 27918144  T
Q  373 gtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    ||||  |||||||||||||||||||| ||||||||||| ||||||    
T  27918145 gtaaataataactccaaagtagaaagcatcttttgtctcaatgaa 27918189  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 28081414 - 28081560
Alignment:
Q  273 ctttgttattcttattttatacat--gtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactca 370  Q
    ||||| |||||||||||| | |||  |||||||||||||||||||||||||||| |||  ||||||||| ||||| |||||||||||||  ||| |||      
T  28081414 ctttgatattcttattttgtgcatatgtgtttatttcccattcatttattgcaggaattgagtgggaatgtggatcattttctcgctttaaagaaacttg 28081513  T
Q  371 tggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    | |||   ||||||||| |||||||||||||| ||||||| ||||||    
T  28081514 ttgtatataataactccgaagtagaaagtatcgtttgtctcaatgaa 28081560  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 28131660 - 28131764
Alignment:
Q  313 catttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctga 412  Q
    ||||| |||||| |||  ||||||||| ||||  |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||| | |    
T  28131660 catttgttgcaggaattgagtgggaatgtggaccattttctctctttggagagactcatagtaaagaataactccaaagtagaaagtatcatttgtataa 28131759  T
Q  413 atgaa 417  Q
    |||||    
T  28131760 atgaa 28131764  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 417
Target Start/End: Original strand, 27974226 - 27974364
Alignment:
Q  279 tattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacg 378  Q
    |||||||||||||| |||||||||||||| ||||| |||| || || |||  ||||||||| ||||| ||||||||||||   |||| | | ||||||      
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtggatcattttctcgcttctaagagtcccgtggtaaat 27974325  T
Q  379 aataactccaaagtagaaagtatcttttgtctgaatgaa 417  Q
    |||||||||| ||||||||||||  ||||||| ||||||    
T  27974326 aataactccatagtagaaagtattgtttgtctaaatgaa 27974364  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 28053208 - 28053298
Alignment:
Q  303 atttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagta 393  Q
    ||||| |||||||||||||||| |||  ||||||| | ||||| ||||||||||| || |||||||| |||||| ||||||||||||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta 28053298  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 28063633 - 28063723
Alignment:
Q  303 atttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatggtaacgaataactccaaagta 393  Q
    ||||| |||||||||||||||| |||  ||||||| | ||||| ||||||||||| || |||||||| |||||| ||||||||||||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta 28063723  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 433
Target Start/End: Complemental strand, 27461541 - 27461455
Alignment:
Q  347 attttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatcttttgtctgaatgaacagcaaatgaacttag 433  Q
    ||||| || ||||| | ||||||||||||   ||||||||||||||||||||||| |||||||| |||||| || ||||||||||||    
T  27461541 attttatctctttgaaaagactcatggtagaaaataactccaaagtagaaagtatattttgtctcaatgaagagaaaatgaacttag 27461455  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 27457556 - 27457454
Alignment:
Q  274 tttgttattcttattttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcatgg 373  Q
    ||||||||| ||||||||| |||||||||||||  ||| | ||||||| || ||   ||||| || |||||| || ||||||||||| | |||||| |||    
T  27457556 tttgttattattattttattcatgtgtttatttttcatccgtttattgtaggaagtaagtggaaacatggatcatattctcgctttgaaaagactcgtgg 27457457  T
Q  374 taa 376  Q
    |||    
T  27457456 taa 27457454  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 28521341 - 28521289
Alignment:
Q  40 ggaatggaggaaaggatagcagattgaaacacagaagggttggagtgttcaaaa 93  Q
    |||||||||||| |||||||||||||||| ||| ||| ||||||||||| ||||    
T  28521341 ggaatggaggaa-ggatagcagattgaaaaacaaaagtgttggagtgttgaaaa 28521289  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 28052299 - 28052335
Alignment:
Q  51 aaggatagcagattgaaacacagaagggttggagtgt 87  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  28052299 aaggatagcagattgaaaaacaaaagggttggagtgt 28052335  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 8019573 - 8019625
Alignment:
Q  272 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 324  Q
    |||| |||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  8019573 acttggttattcttatcatatgcatgtgtttatttcccatttatttattgcag 8019625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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