View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14036_high_2 (Length: 356)
Name: NF14036_high_2
Description: NF14036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14036_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 5183789 - 5183449
Alignment:
| Q |
1 |
agaaaaaccaatgctttctcgtatcaaaaccaaacatacaaggtccatgagtgaccagttaaactccatgacaagtttcaaacatgattctatgtctcca |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5183789 |
agaaaaactaacgctttctcgtatcaaaaccaaacatacaaggtccataagtgaccagttaaactccatgacaagtttcaaacatgattctatgtctcca |
5183690 |
T |
|
| Q |
101 |
aactctgtccttttccaaccacagcttcaaacaatcctctcaggaaaagatgtcacagacttcaacacggaagctgaaaagcaaatacagttgcaacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5183689 |
aactctgtccttttccaaccacagcttcaaacaatcctctcaggaaaagatgtcacagacttcaacacagaagctgaaaagcaaatacagttgcaacttc |
5183590 |
T |
|
| Q |
201 |
aagctgtgcctaacaagaacatcataagaaatggaagaaggaaaagtggaagcaagagtttatcagaccttgagtttgaggaggtaaaagggttcatgga |
300 |
Q |
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| T |
5183589 |
aagctgtgcctaacaagaacatcataagaaatggaagaaggaaaagtggaagcaagagtttatcagaccttgagtttgaggaggtaaaagggttcatgga |
5183490 |
T |
|
| Q |
301 |
tcttggttttgttttctcagaggaagataaagacacaagct |
341 |
Q |
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| T |
5183489 |
tcttggttttgttttctcagaggaagataaagacacaagct |
5183449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 35219408 - 35219484
Alignment:
| Q |
257 |
agtttatcagaccttgagtttgaggaggtaaaagggttcatggatcttggttttgttttctcagaggaagataaaga |
333 |
Q |
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||||||||||| ||||||||| ||||| |||||||||| |||||| | |||||||| || || |||||||||||||| |
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| T |
35219408 |
agtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgaggaagataaaga |
35219484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 35968901 - 35968809
Alignment:
| Q |
241 |
gaaaagtggaagcaagagtttatcagaccttgagtttgaggaggtaaaagggttcatggatcttggttttgttttctcagaggaagataaaga |
333 |
Q |
| |
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|||||| | ||| ||||||||||| |||||||| ||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
35968901 |
gaaaagagaaagtaagagtttatctgaccttgaatttgaggagctaaaaggttttatggatctgggttttgttttctcagaggaagataaaga |
35968809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 31166630 - 31166707
Alignment:
| Q |
256 |
gagtttatcagaccttgagtttgaggaggtaaaagggttcatggatcttggttttgttttctcagaggaagataaaga |
333 |
Q |
| |
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|||||||||||| ||||||||| | ||| |||||||||| |||||| | |||||||| || || |||||||||||||| |
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| T |
31166630 |
gagtttatcagagcttgagtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagataaaga |
31166707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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