View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14036_high_4 (Length: 231)
Name: NF14036_high_4
Description: NF14036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14036_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3073598 - 3073377
Alignment:
| Q |
1 |
aatattaataacaataatagttgtaaaaagtgtttgttgtttagattcaaggtaaaaaacaacaaggtcgtgcaatgataattggaagttttgtagtttt |
100 |
Q |
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| T |
3073598 |
aatattaataacaataatagttgtaaaaattgttttttgtttagattcaaggtaaaagacaacaaggtcgtgcaatgataattggaagttttgtagtttt |
3073499 |
T |
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| Q |
101 |
ctatttgcaattgaagatctattattgtgctcaattgaatcaatgagttgatttgtttcacagttcgattcttcggctcaatggaatcagtgacttgtta |
200 |
Q |
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| T |
3073498 |
ctatttgcaattgaagatctattattgtgctcaattgaatcaatgagttgatttgtttcacagttcgattcttcggctcaatggaatcagtgacttgtta |
3073399 |
T |
|
| Q |
201 |
ctcttgtaatatgtactttgtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3073398 |
ctcttgtaatatgtactttgtg |
3073377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 21250032 - 21250179
Alignment:
| Q |
76 |
tgataattggaagttttgtagttttctatttgcaattgaagatctattattgtgctcaattgaatcaatgagttgatttgtttcacagttcgattcttcg |
175 |
Q |
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| T |
21250032 |
tgataattggaagttttatagttttctatttacaattgaagatctattattgtgcacaattgaatcaccgaggttatttgtttcacagttcaatgcttct |
21250131 |
T |
|
| Q |
176 |
gctcaatggaatcagtgacttgttactcttgtaatatgtactttgtga |
223 |
Q |
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| T |
21250132 |
gctcaatggaatcaacgaattgttactcatgtaatatatactttgtga |
21250179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 27738521 - 27738377
Alignment:
| Q |
75 |
atgataattggaagttttgtagttttctatttgcaattgaagatctattattgtgctcaattgaatcaatgagttgatttgtttcacagttcgattcttc |
174 |
Q |
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|||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||| || |||| |
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| T |
27738521 |
atgataatcgaaagttttgtagttttctatttacaattaaagatctattattgtgctcaattgaattagtgaggtgatttgtttcacagttcaatgcttc |
27738422 |
T |
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| Q |
175 |
ggctcaatggaatcagtgacttgttactcttgtaatatgtacttt |
219 |
Q |
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| T |
27738421 |
tgctcagttaaatcagtgacttgttattcatgtaatgtgtacttt |
27738377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 27731501 - 27731434
Alignment:
| Q |
75 |
atgataattggaagttttgtagttttctatttgcaattgaagatctattattgtgctcaattgaatca |
142 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
27731501 |
atgataattggaagttttgtagttttctatttacaattcaagatctaatattgtgctcaattgaatca |
27731434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 21154961 - 21154905
Alignment:
| Q |
75 |
atgataattggaagttttgtagttttctatttgcaattgaagatctattattgtgct |
131 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
21154961 |
atgataattggaagttttgtagttttctatttacgattgaagatctattattgtgct |
21154905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 21155384 - 21155330
Alignment:
| Q |
23 |
gtaaaaagtgtttgttgtttagattcaaggtaaaaaacaacaaggtcgtgcaatg |
77 |
Q |
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|||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||| |
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| T |
21155384 |
gtaaaaagagtttgttgttgagattcaaggttaaagacaacaaggtcgtgcaatg |
21155330 |
T |
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