View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14036_high_5 (Length: 218)
Name: NF14036_high_5
Description: NF14036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14036_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 50760940 - 50760755
Alignment:
| Q |
14 |
gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50760940 |
gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc |
50760841 |
T |
|
| Q |
114 |
cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50760840 |
cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctct |
50760755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 44295874 - 44295691
Alignment:
| Q |
14 |
gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44295874 |
gcagagacattgattggatgcatcattcttgtcaaatggagattttgtagtaatatcaaactcgaatccgtttgacatcgctttctgggacactaaggtc |
44295775 |
T |
|
| Q |
114 |
cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctct |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
44295774 |
cagcctatctaaactgcctgagttagccaccggcgcctgacaaatcatacaagtt--tataatattagcatgaaatgcgtgtctct |
44295691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University