View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14036_low_1 (Length: 417)
Name: NF14036_low_1
Description: NF14036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14036_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 38887450 - 38887841
Alignment:
| Q |
9 |
aacaaaggacgtgagttagaaagtggcaatgaattgggtggggacaactgnnnnnnnnnnnnnnataacaacaaacaatagacaacaagagtgaagtaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887450 |
aacaaaggacgtgagttagaaagtggcaatgaattgggtggggacaactgtatatata------ataacaacaaacaatagacaacaagagtgaagtaga |
38887543 |
T |
|
| Q |
109 |
aatgaaatgagccttgtgttatttctttatataatagaaaaagttttaatttccttattaatgctttcttgctcatggtttgtttttggtagttgaggag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887544 |
aatgaaatgagccttgtgttatttctttatataatagaaaaagttttaatttccttattaatgctttcttgctcatggtttgtttttggtagttgaggag |
38887643 |
T |
|
| Q |
209 |
gtgagaataaagaaagaggaagtgattatttctgatgaatgcatctatcatttcagtgttgttttgtcaaagccgaggttggaaaggaaggacatgtttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38887644 |
gtgagaataaagaaagaggaagtgattatttctgatgaatgcatctatcatttcagtgttgttttgtcaaagccgaggttgggaaggaaggacatgtttg |
38887743 |
T |
|
| Q |
309 |
cagaagagaaagacatgtgcaattgatcaaagtgcaactcaactatatgctacatgggaa------tcctagtgctagtggaaaaatataggcccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
38887744 |
cagaagagaaagacatgtgcaattgatcaaagtgcaactcaactatatgctacatgggaatgctagtgctagtgctagtggaaaaatataggcccttt |
38887841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University