View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_high_13 (Length: 309)
Name: NF14037_high_13
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 1390194 - 1390059
Alignment:
| Q |
162 |
ttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataa---cttaaatggtggggtaccgacttaataggtcataaga |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
1390194 |
ttcacaaggcttacattgaagccaaaccatgtcactacctgtatcaacaataccatataataactttaatggtggggtaccgactgaataggtcataaga |
1390095 |
T |
|
| Q |
259 |
aagtcacctttagcggggatcacagtggatttaggt |
294 |
Q |
| |
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| T |
1390094 |
aactcacctttagcggggatcacagtggatttaggt |
1390059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 295
Target Start/End: Complemental strand, 45645162 - 45644973
Alignment:
| Q |
107 |
tgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatc |
206 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||||| |||||||||||||| |||| |||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
45645162 |
tgtaacttgatgattttgatggattaaacttaggagtggtttggttgtaacattgtttacaaggctcgcattgaagccaaacaatgtcactacctgtatc |
45645063 |
T |
|
| Q |
207 |
aacaataccatat-aacttaaatggtggggtaccgacttaataggtcataagaaagtcacctttagcggggatcacagtggatttaggtg |
295 |
Q |
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| T |
45645062 |
gataataccatataaacttaaatggtggggtaccaactcaatagttcatgagataagaacctgtattggggatcacagttgattcaggtg |
45644973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 14191857 - 14191704
Alignment:
| Q |
101 |
tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactacc |
200 |
Q |
| |
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|||| ||||||||||| | |||| | |||||||| |||||||| |||||||||||||| | || |||||||| ||||||||||||||| || |||||||| |
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| T |
14191857 |
tgtttttgtaacttgacgatttcgacggattaaacataggagtggtttggttgtaacattcttgacaaggctcacattgaagccaaacaatatcactacc |
14191758 |
T |
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| Q |
201 |
agtatcaacaataccatataacttaaatggtggggtaccgacttaataggtcat |
254 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
14191757 |
ggtatcaacaataccatataacttaaatggtggtgtaccaactgaataggtcat |
14191704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 137 - 296
Target Start/End: Complemental strand, 40717640 - 40717481
Alignment:
| Q |
137 |
taggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatggtggggt |
236 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||| | |
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| T |
40717640 |
taggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtgtcaacaatgccatataacttaaatggtgggct |
40717541 |
T |
|
| Q |
237 |
accgacttaataggtcataagaaagtcacctttagcggggatcacagtggatttaggtga |
296 |
Q |
| |
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||| | | |||||||||| ||| | ||||| ||| | ||||| ||| | |||| |||||| |
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|
| T |
40717540 |
accaattgaataggtcatcagatactcaccattatcagggattacatttgattcaggtga |
40717481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 295
Target Start/End: Complemental strand, 14182881 - 14182723
Alignment:
| Q |
137 |
taggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatggtggggt |
236 |
Q |
| |
|
||||||| ||||| |||||||| | || ||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |
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|
| T |
14182881 |
taggagttgtttgattgtaacattctttgcaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaatgccatataacttaaatggtggggt |
14182782 |
T |
|
| Q |
237 |
accgacttaataggtcataagaaagtcacctttagcggggatcacagtggatttaggtg |
295 |
Q |
| |
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||| ||| |||||||||| ||| | || || | | ||||||| ||||| |||| ||||| |
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|
| T |
14182781 |
accaactgaataggtcatgagatactcgccatgatcggggattacagttgattgaggtg |
14182723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 14200819 - 14200733
Alignment:
| Q |
153 |
gtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatggtggggtacc |
239 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||| | ||||||||| |||||||||| ||| ||| |||||||||||| ||||| |
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|
| T |
14200819 |
gtaacattgtttacaaggctcacattgaagccaaacaaggtcactacctgtatcaacaaagccaaataccttaaatggtggagtacc |
14200733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 82 - 295
Target Start/End: Complemental strand, 34665682 - 34665472
Alignment:
| Q |
82 |
ttagacaaacaagaaatattgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaa |
181 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| |||| ||| | |||||||| || ||||| |||||||||||||| ||||||||||||| |||||||| |
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|
| T |
34665682 |
ttagacaaacaaggaat---gtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcacattgaa |
34665586 |
T |
|
| Q |
182 |
gccaaaccatgtcactaccagtatcaacaataccatataacttaaatggtggggtaccgacttaataggtcataagaaagtcacctttagcggggatcac |
281 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||| |||| |||| ||| |||||||| ||| |||||||||| ||| | |||| || ||||||| || |
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|
| T |
34665585 |
gccaaacaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataaccacccctatcggggattac |
34665486 |
T |
|
| Q |
282 |
agtggatttaggtg |
295 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
34665485 |
agttgattcaggtg |
34665472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 19649578 - 19649692
Alignment:
| Q |
106 |
ttgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtat |
205 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
19649578 |
ttgtaacttgatgattttgaaggattaaatataggagtggtttgcttgtagcattgttcacaaggcttacattgaagccaaacaatgtcactacctgtat |
19649677 |
T |
|
| Q |
206 |
caacaataccatata |
220 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
19649678 |
caacaacaccatata |
19649692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 34645972 - 34645778
Alignment:
| Q |
101 |
tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactacc |
200 |
Q |
| |
|
|||| |||||||| |||| ||| | |||||||| || ||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
34645972 |
tgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcactacc |
34645873 |
T |
|
| Q |
201 |
agtatcaacaataccatataacttaaatggtggggtaccgacttaataggtcataagaaagtcacctttagcggggatcacagtggatttaggtg |
295 |
Q |
| |
|
|||||| |||||||||||| |||| ||| |||||||| ||| |||||||||| ||| | |||| || ||||||| ||||| |||| ||||| |
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|
| T |
34645872 |
tgtatcagcaataccatatatcttagttggaggggtaccaactgaataggtcatgagataaccacccctatcggggattacagttgattcaggtg |
34645778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 34302604 - 34302477
Alignment:
| Q |
127 |
ggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaa |
226 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||||||| |||||| |
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|
| T |
34302604 |
ggattaaacttaggagtggtttgattgtaacattgttcacaaggctcgcattgtagccatacaatgtcactacctgtatcgacaataccatatgacttaa |
34302505 |
T |
|
| Q |
227 |
atggtggggtaccgacttaataggtcat |
254 |
Q |
| |
|
||||||||| || ||| ||||| |||| |
|
|
| T |
34302504 |
ttggtggggtgccaactgaatagctcat |
34302477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 28402794 - 28402661
Alignment:
| Q |
106 |
ttgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgt-tcacaaggcttacattgaagccaaaccatgtcactaccagta |
204 |
Q |
| |
|
||||||||||| | ||| |||||||||| ||||||| ||||| ||| |||| ||| | |||||||| |||||||||||||| |||| |||||| ||| |
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|
| T |
28402794 |
ttgtaacttgaagattttgaaggattaaatataggagaggtttgattgaaaca-tgtatgacaaggctggcattgaagccaaactatgttactacctgta |
28402696 |
T |
|
| Q |
205 |
tcaacaataccatataacttaaatggtggggtacc |
239 |
Q |
| |
|
|| | || |||||| | ||||| ||||||||||| |
|
|
| T |
28402695 |
tccataaaaccataaactttaaagggtggggtacc |
28402661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 44491545 - 44491678
Alignment:
| Q |
106 |
ttgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaaca-atgttcacaaggcttacattgaagccaaaccatgtcactaccagta |
204 |
Q |
| |
|
||||||||||| | ||| |||||||||| ||||| | ||||| |||||||| || || |||||||| |||||||||||||| | ||||||||| ||| |
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|
| T |
44491545 |
ttgtaacttgaagattttgaaggattaaatataggcgaggtttgcttgtaacatatattg-caaggcttgcattgaagccaaactaagtcactacctgta |
44491643 |
T |
|
| Q |
205 |
tcaacaataccatataacttaaatggtggggtacc |
239 |
Q |
| |
|
|| | | ||| || | |||||||||||||||||| |
|
|
| T |
44491644 |
tctatagaaccgtagaccttaaatggtggggtacc |
44491678 |
T |
|
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