View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14037_high_17 (Length: 280)

Name: NF14037_high_17
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14037_high_17
NF14037_high_17
[»] chr1 (2 HSPs)
chr1 (58-262)||(49420749-49420953)
chr1 (163-258)||(42645939-42646032)
[»] chr4 (1 HSPs)
chr4 (151-262)||(51412646-51412757)
[»] chr8 (1 HSPs)
chr8 (64-248)||(35839786-35839978)
[»] chr6 (1 HSPs)
chr6 (163-258)||(1770683-1770778)
[»] chr7 (2 HSPs)
chr7 (215-258)||(9046-9089)
chr7 (163-253)||(47800078-47800168)
[»] scaffold0181 (1 HSPs)
scaffold0181 (214-262)||(15128-15176)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 58 - 262
Target Start/End: Original strand, 49420749 - 49420953
Alignment:
Q  58 ggctcatgattcaacagtgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgctggtgagag 157  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49420749 ggctcatgattcaacgatgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgctggtgagag 49420848  T
Q  158 agccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggcta 257  Q
    |||||||||||| ||||||||||||||||||||||||||       |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  49420849 agccatggaggacatagaattgttggagaagatagtgtgaaaaaaattcagtgtggagagaacatgataagagggtgctccttatttaatcaaatggcta 49420948  T
Q  258 aaatc 262  Q
    |||||    
T  49420949 aaatc 49420953  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 42645939 - 42646032
Alignment:
Q  163 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaa 258  Q
    ||||||||| ||||||||||| ||||||||||||       |||| |||  ||||||||||||| ||| || ||| ||||||||||||||||||||    
T  42645939 tggaggagagagaattgttggggaagatagtgtgaaaaa--ttcagtgttgagagaacatgataagagtgtactctttatttaatcaaatggctaa 42646032  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 51412757 - 51412646
Alignment:
Q  151 gtgagagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaa 250  Q
    ||||||||| |||||| ||||||||| |||||| ||||||||||||       |||| |||  ||||||||||||| ||| |||||||||||||||||||    
T  51412757 gtgagagagacatggaagagatagaactgttggggaagatagtgtgaaaaaaattcagtgttgagagaacatgataagagtgtgctccttatttaatcaa 51412658  T
Q  251 atggctaaaatc 262  Q
    ||||||||||||    
T  51412657 atggctaaaatc 51412646  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 35839978 - 35839786
Alignment:
Q  64 tgattcaacagtgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgc----------tggtg 153  Q
    |||||||||||||||| ||| ||   ||||||||| ||||||||||||||||||||||||||||||||||||  ||  |||||||          |||||    
T  35839978 tgattcaacagtgtgtatttatttgcttcctcaaa-gttctttgttgaaacttgaatgaaatggatttgtttgaaggtgagttgctgattgtggttggtg 35839880  T
Q  154 agagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatc 248  Q
    | |||| ||||||||||||||||| |||||  |||||||||||       |||| |||  ||||||||||||| ||| |||||||||| ||||||    
T  35839879 aaagagacatggaggagatagaatagttgggaaagatagtgtg-aaaaaattcagtgttgagagaacatgataagagtgtgctccttacttaatc 35839786  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 1770683 - 1770778
Alignment:
Q  163 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaa 258  Q
    ||||||||| ||||||||||| ||||||| ||||       ||||||||   |||||||||||| ||| |||||| ||||||||||||||||||||    
T  1770683 tggaggagagagaattgttggggaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatggctaa 1770778  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 9046 - 9089
Alignment:
Q  215 gagaacatgatacgagggtgctccttatttaatcaaatggctaa 258  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||    
T  9046 gagaacatgataagagtgtgctctttatttaatcaaatggctaa 9089  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 47800078 - 47800168
Alignment:
Q  163 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatg 253  Q
    ||||||||| ||||||||| | ||||||| ||||       ||||||||   |||||||||||| ||| |||||| |||||||||||||||    
T  47800078 tggaggagagagaattgttagtgaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatg 47800168  T

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Target: scaffold0181 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 15176 - 15128
Alignment:
Q  214 agagaacatgatacgagggtgctccttatttaatcaaatggctaaaatc 262  Q
    ||||| ||||||| ||  |||||| ||||||||||||||||||||||||    
T  15176 agagagcatgataagattgtgctcattatttaatcaaatggctaaaatc 15128  T

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