View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14037_high_18 (Length: 272)

Name: NF14037_high_18
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14037_high_18
NF14037_high_18
[»] chr2 (2 HSPs)
chr2 (6-272)||(9574220-9574486)
chr2 (6-57)||(9565355-9565406)
[»] chr3 (3 HSPs)
chr3 (101-203)||(10533485-10533587)
chr3 (22-85)||(8045214-8045277)
chr3 (133-203)||(22949570-22949640)
[»] chr1 (2 HSPs)
chr1 (25-203)||(25623847-25624025)
chr1 (130-190)||(5417079-5417139)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-203)||(91801-91903)
[»] chr4 (3 HSPs)
chr4 (101-203)||(47249575-47249677)
chr4 (114-162)||(42336435-42336483)
chr4 (133-203)||(3955185-3955255)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 9574220 - 9574486
Alignment:
Q  6 aactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9574220 aactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaa 9574319  T
Q  106 tataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactctg 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  9574320 tataccaaagtagcttttgtaactggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacagaacattagctactcctcgatactctg 9574419  T
Q  206 cacttaatcgaggcaaggcataatgtatttttgcataataagggatcaaattatcaccaatatatac 272  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  9574420 cacttaatcgaggcaaggcataatgtatttttgcataataagagatcaagttatcaccaatatatac 9574486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 9565355 - 9565406
Alignment:
Q  6 aactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttat 57  Q
    ||||||||| | |||||||||||| ||||| ||||||| |||||||||||||    
T  9565355 aactttttcgcccaagaagtgtatgttcatatcaatgtgtttggtgtgttat 9565406  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 10533485 - 10533587
Alignment:
Q  101 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 200  Q
    ||||||| |||||||| ||| |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  10533485 cacaataaaccaaagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 10533584  T
Q  201 ctc 203  Q
    |||    
T  10533585 ctc 10533587  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 8045277 - 8045214
Alignment:
Q  22 aagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagataca 85  Q
    ||||||||||  ||||| |||| ||||||| |||  |||||||||| |||||||||||||||||    
T  8045277 aagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactggattgtcggatagataca 8045214  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 22949640 - 22949570
Alignment:
Q  133 caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 203  Q
    ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| ||||||||    
T  22949640 caatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggtactc 22949570  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 25623847 - 25624025
Alignment:
Q  25 tgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagcttttg 124  Q
    ||||||||||| || |||| ||||||| |||  ||||| ||||  ||| |||||| ||| |  |||   |||||| ||||||| |||||||||| | |||    
T  25623847 tgtatattcatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattatcacaataaaccaaagtagatgttg 25623946  T
Q  125 taaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 203  Q
    | || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| |  ||||| ||||||||    
T  25623947 tgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggtgactccgcggtactc 25624025  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 5417079 - 5417139
Alignment:
Q  130 ggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagcta 190  Q
    ||||||||||||||| ||||| ||||||||||| | || |||| | |||| ||||||||||    
T  5417079 ggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacattagcta 5417139  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 91903 - 91801
Alignment:
Q  101 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 200  Q
    ||||||| |||| ||| ||| |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  91903 cacaataaaccagagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 91804  T
Q  201 ctc 203  Q
    |||    
T  91803 ctc 91801  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 47249575 - 47249677
Alignment:
Q  101 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 200  Q
    ||||||| |||| ||||| | |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  47249575 cacaataaaccatagtagatgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 47249674  T
Q  201 ctc 203  Q
    |||    
T  47249675 ctc 47249677  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 42336483 - 42336435
Alignment:
Q  114 agtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatc 162  Q
    ||||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  42336483 agtagcttttgtaacagaacaatgtatttctaaaagtaagattctaatc 42336435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 3955255 - 3955185
Alignment:
Q  133 caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 203  Q
    ||||||||||| || ||||||||||||||| | ||||||||||| || ||||| || |||||  |||||||    
T  3955255 caatgtagttccaacagtaagtttctaatccaacaagatttagatactacattggcgactccgtggtactc 3955185  T

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