View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_high_3 (Length: 581)
Name: NF14037_high_3
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 67 - 506
Target Start/End: Complemental strand, 21251345 - 21250906
Alignment:
| Q |
67 |
ttgtattggatcatgaacatgagaaagttaactgggtttactaacttcgcaagtgaatagattagttgagatattagagtgtttaagtgtcagttagtga |
166 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |
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| T |
21251345 |
ttgtattggatcatgaacatgagaaagttaactgg-tttactaactttgcaagtgaatagattggttgagatattagagtgtttaactgttagttagtta |
21251247 |
T |
|
| Q |
167 |
atggtagcttgctatacaactatatttgtatataaatacattatgtaaaaaccctaatattttaaaaacttgaattgtgctttaatggtagttgtactat |
266 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
21251246 |
atgatagcttgctatacaactatatttgtatataaattcattatgtaaacaccctaatattttgaaaacttgaattgtgctttaatggtaccagtactat |
21251147 |
T |
|
| Q |
267 |
tacttatttataacaccggatgaaatgaaacaacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatca |
366 |
Q |
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| T |
21251146 |
tacttacttataacaccgtatgaaatgaaacaacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatca |
21251047 |
T |
|
| Q |
367 |
ataccaaagcttctatttttcatacattgaactagtgagtacatctaacacatagttattgaatatgatggtattacatggtgatttagtaggaggtggt |
466 |
Q |
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| T |
21251046 |
ataccaaaacttctatttttcatacattgaaatagtgagtacatccaacatatggttattgaatatgatggtattgcatggtgatttaataagaggtggt |
21250947 |
T |
|
| Q |
467 |
ccatccatg-agggaaaacaaaacaagggaagaggttggta |
506 |
Q |
| |
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| T |
21250946 |
tcattcgtgcggggaaaacaaaacaaggaaagaggtaggta |
21250906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 47 - 506
Target Start/End: Complemental strand, 21252287 - 21251829
Alignment:
| Q |
47 |
tatgtcattatgcaacgtctttgtattggatcatgaacatgagaaagttaactgggtttactaacttcgcaagtgaatagattagttgagatattagagt |
146 |
Q |
| |
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|||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
21252287 |
tatgtcattatgcagtgtctttatattggatcaagaacatgagaaagttaactgg-tttactaactccgcacgtaaatagattagttgagatattagagt |
21252189 |
T |
|
| Q |
147 |
gtttaagtgtcagttagtgaatggtagcttgctatacaactatatttgtatataaatacattatgtaaaaaccctaatattttaaaaacttgaattgtgc |
246 |
Q |
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||||| ||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
21252188 |
gtttagctgtcagttaatgaatggtagtttgatatacaactacatttgtatataaatacattatgtaaataccctaatattttaaaaccttgaattttgc |
21252089 |
T |
|
| Q |
247 |
tttaatggtagttgtactattacttatttataacaccggatgaaatgaaacaacataaaagattgaagatttgcattttatcttgaaactgcatttttct |
346 |
Q |
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| ||||||| ||||||||||||| ||| | ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21252088 |
tccaatggtacaagtactattacttacttacatcaccgtatgaaatgaaacaacacaaaagattgaaaatttgcattttatcttgaaactgcatttttct |
21251989 |
T |
|
| Q |
347 |
gattgataaaattacaatcaataccaaagcttctatttttcatacattgaactagtgagtacatctaacacatagttattgaatatgatggtattacatg |
446 |
Q |
| |
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|| | |||||||| | |||||||||| |||||||||| || ||||||||| |||||||||| ||||||| |||||||||||||||||||| |||| |
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| T |
21251988 |
aatggtcaaaattactaacaataccaaaatgtctatttttcgtatattgaactaatgagtacatccaacacatgattattgaatatgatggtattgcatg |
21251889 |
T |
|
| Q |
447 |
gtgatttagtaggaggtggtccatccatgagggaaaacaaaacaagggaagaggttggta |
506 |
Q |
| |
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|||||||| ||||||||| ||| || |||||||||||||||||||| ||||||| |||| |
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|
| T |
21251888 |
gtgatttaataggaggtgatccgtctgtgagggaaaacaaaacaaggaaagaggtaggta |
21251829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 53 - 373
Target Start/End: Complemental strand, 21250508 - 21250188
Alignment:
| Q |
53 |
attatgcaacgtctttgtattggatcatgaacatgagaaagttaactgggtttactaacttcgcaagtgaatagattagttgagatattagagtgtttaa |
152 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
21250508 |
attatgcagtgtctttgtattggaccataaacatgagaaagttaattgagtttactaactcagcaagtaaatagattagttgagatattagagtgtttaa |
21250409 |
T |
|
| Q |
153 |
gtgtcagttagtgaatggtagcttgctatacaactatatttgtatataaatacattatgtaaaaaccctaatattttaaaaacttgaattgtgctttaat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
21250408 |
ctgtcagttagtgaatggtagcttgctatacaactacatttgtatataaatacattatgtaaacaccctaatattttaaaaacttgaattgtgctccaat |
21250309 |
T |
|
| Q |
253 |
ggtagttgtactattacttatttataacaccggatgaaatgaaacaacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattga |
352 |
Q |
| |
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|||| ||||||||||||| ||| |||||| ||||||| |||||||| | ||||||||||||||||| |||||||||||| || ||||||||||| || |
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| T |
21250308 |
ggtaccggtactattacttacttacaacaccatatgaaataaaacaacacagaagattgaagatttgcaatttatcttgaaattgtatttttctgatgga |
21250209 |
T |
|
| Q |
353 |
taaaattacaatcaataccaa |
373 |
Q |
| |
|
||||||||||| ||||||||| |
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| T |
21250208 |
taaaattacaaacaataccaa |
21250188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 89 - 318
Target Start/End: Complemental strand, 21252741 - 21252512
Alignment:
| Q |
89 |
gaaagttaactgggtttactaacttcgcaagtgaatagattagttgagatattagagtgtttaagtgtcagttagtgaatggtagcttgctatacaacta |
188 |
Q |
| |
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|||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |
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| T |
21252741 |
gaaagttaactgagtttactaactccacaagtaaatagattagttgagatattagagtatttagccgtcagttagagaatggtagcttgctatacaaata |
21252642 |
T |
|
| Q |
189 |
tatttgtatataaatacattatgtaaaaaccctaatattttaaaaacttgaattgtgctttaatggtagttgtactattacttatttataacaccggatg |
288 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||| || ||||||||||||||| || ||| ||| |
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| T |
21252641 |
catttgtatataaatacattacgtaaacaccctaatatttgaaaaacttgaattgtgctccaatgataccataactattacttatttacaataccatatg |
21252542 |
T |
|
| Q |
289 |
aaatgaaacaacataaaagattgaagattt |
318 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |
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| T |
21252541 |
aaataaaaaaacataaaagattgaagattt |
21252512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 27726310 - 27726398
Alignment:
| Q |
291 |
atgaaacaacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaaagcttc |
379 |
Q |
| |
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|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||| |
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| T |
27726310 |
atgaaacagcaaaaaagattgaaaatttgcattttatcttgaaactgcatttttctgatggataaagttacaaagaataccaaaacttc |
27726398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 374
Target Start/End: Original strand, 27738225 - 27738364
Alignment:
| Q |
231 |
aaaacttgaattgtgctttaatggtagttgtactattacttatttataacaccggatgaaatgaaacaacataaaagattgaagatttgcattttatctt |
330 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||||||||| ||| |||||| | ||||||| || ||||||||||| |||||||||||||||| |
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|
| T |
27738225 |
aaaacttgaattgtgattcagtggtaccagtactattacttacttacaacacc-----atatgaaacggcagaaaagattgaaaatttgcattttatctt |
27738319 |
T |
|
| Q |
331 |
gaaactgca-tttttctgattgataaaattacaatcaataccaaa |
374 |
Q |
| |
|
|||||||| ||||| | || ||||||||||||| |||||||||| |
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|
| T |
27738320 |
caaactgcatttttttttatggataaaattacaaacaataccaaa |
27738364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 3072286 - 3072369
Alignment:
| Q |
47 |
tatgtcattatgcaacgtctttgtattggatcatgaacatgagaaagttaactgggtttactaacttcgcaagtgaatagatta |
130 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| ||||||| || || ||||||| ||| ||||||| |||| |||| |
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|
| T |
3072286 |
tatgtcattatgtagtgtctttgtattggatcatgaacattagaaagtaaattgagtttacttactccgcaagtaaatacatta |
3072369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 3072518 - 3072551
Alignment:
| Q |
322 |
ttttatcttgaaactgcatttttctgattgataa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3072518 |
ttttatcttgaaactgcatttttctgattgataa |
3072551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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