View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_high_5 (Length: 497)
Name: NF14037_high_5
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Original strand, 16453152 - 16453623
Alignment:
| Q |
9 |
cagagagacctcagaaaaatcaggctatggtgttatcttcatccattctcacattgacccaacctccacctgctgatgcagaaaaaggcctagcccgtca |
108 |
Q |
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| T |
16453152 |
cagagagacctcagaaaaatcaggctatggtgttatcttcatccattctcacattgacccaacctccacctgctgatgcagaaaaaggcctagcccgtca |
16453251 |
T |
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| Q |
109 |
accaatacttctacctatgagtcctttggaggatgtggtaggagaaacttcaaaaagtgttagagaggatggagaagtttatgatattacaattcaaaat |
208 |
Q |
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| T |
16453252 |
accaatacttctacctatgagtcctttggaggatgtggtaggagaaacttcaaaaagtgttagagaggatggagaagtttatgatattacaattcaaaat |
16453351 |
T |
|
| Q |
209 |
gggattgaaagatgtcatgagaatgatgctgtccaactggaatcagtatcctcttccgaacttcattctgaagagtcccctttcaacactagaggttccg |
308 |
Q |
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| T |
16453352 |
gggattgaaagatgtcatgagaatgatgctgtccaactggaatcagtatcctcttccgaacttcattctgaagagtcccctttcaacactagaggttccg |
16453451 |
T |
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| Q |
309 |
actcagatgtccccttcaaccgagttggtagaaaacactttattagtggcctggaagccatatctcctggtgcgaaatctgatgagtcttcttccaacac |
408 |
Q |
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| T |
16453452 |
actcagatgaccccttcgaccgagttggtagaaaacactttattagtggcctggaagtcatatctcctggtgcgaaatctgatgagtcttcttccaacac |
16453551 |
T |
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| Q |
409 |
taaagggtcacactcagattatgtcatcaacttagttgatagaaaatcctctgttaatggccatgtaacctt |
480 |
Q |
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| T |
16453552 |
taaagggtcacactcagattatgtcatcaacttagttgatagaaaatcctctgttaatggccatgtaacctt |
16453623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 16349508 - 16349430
Alignment:
| Q |
352 |
tagtggcctggaagccatatctcctggtgcgaaatctgatgagtcttcttccaacactaaagggtcacactcagattat |
430 |
Q |
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| T |
16349508 |
tagtggccaggaaaccatatctcattgggcgaaatctgaagagtcttcttccaatactaaagtttctcaatcagattat |
16349430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 16349769 - 16349663
Alignment:
| Q |
100 |
agcccgtcaaccaatacttctacctatgagtcctttggaggatgtggtaggagaaacttcaaaaagtgttagagaggatggagaagtttatgatattaca |
199 |
Q |
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| T |
16349769 |
agcccctcaaccaatacttccaattaagaggcctttggaggatgtcaaaggagaaacttcaggaagtgttccaaaggat---gaagtttatgctattaca |
16349673 |
T |
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| Q |
200 |
attcaaaatg |
209 |
Q |
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| T |
16349672 |
gttcaaaatg |
16349663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 16349841 - 16349796
Alignment:
| Q |
34 |
tatggtgttatcttcatccattctcacattgacccaacctccacct |
79 |
Q |
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| T |
16349841 |
tatggtgttatctttgcccattctcacgttgacccaacctccacct |
16349796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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