View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14037_low_1 (Length: 1634)
Name: NF14037_low_1
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 631 - 1178
Target Start/End: Complemental strand, 32532551 - 32532004
Alignment:
| Q |
631 |
agggatccaaaaccaaccaatcatactgtggcacattcatgaatgtggcagaactgaatttacaatcattttggtttccttcacctgttgtcaggtttgc |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532551 |
agggatccaaaaccaaccaatcatactgtggcacattcatgaatgtggcagaactgaatttacaatcattttggtttccttcacctgttgtcaggtttgc |
32532452 |
T |
|
| Q |
731 |
ttgtgcgcaaatcctgcttttgtagtgaagacaaggttgcagcttcagacgcctcttcttcatgcacggccatattctgggctatatggtctgaactcca |
830 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532451 |
ttgtgcgcaaatcctgcttttgtagtgaagacaaggttgcagcttcagacgcctcttcatcatgcacggccatattctgggctatatggtctgaactcca |
32532352 |
T |
|
| Q |
831 |
tcttacattagctatatattttgaactctttacacttggtggggacgtttatccctctcacccaaatcatgctgtggttatattcatcatttataccaat |
930 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532351 |
tcttacattagctatatattttgaactctttacacttggcggggacgtttatccctctcacccaaatcatgctgtggttatattcatcatttataccaat |
32532252 |
T |
|
| Q |
931 |
tgcgaacctgccatgatgttattttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaa |
1030 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532251 |
tgcgaacctgccatgatgttattttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaa |
32532152 |
T |
|
| Q |
1031 |
ttgttcctggnnnnnnnctggtatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaatattaatggaagattacatgtaatatgtgga |
1130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532151 |
ttgttcctggtttttttctggtatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaatattaatggaagattacatgtaatatgtgga |
32532052 |
T |
|
| Q |
1131 |
attgtgcatggttaaaggtcttccttcttcaatgaacataatacagta |
1178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532051 |
attgtgcatggttaaaggtcttccttcttcaatgaacataatacagta |
32532004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 592
Target Start/End: Complemental strand, 32533119 - 32532552
Alignment:
| Q |
19 |
aaaccctcaaacagaccccaagatatctaactaacttcagttagttagttacatggggggttatagtacgtttatggtgtagcaaaagctttcatgagtt |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32533119 |
aaaccctcaaacacaccccaagatatctaactaacttcagttagttagttacatggggggttatagtacgtttatggtgtagcaaaagctttcatgagtt |
32533020 |
T |
|
| Q |
119 |
ggaggaaacatgctcccttgataatttttgaattgttgctggtccatcttattgctttcctagaagaccaaactcatcaccccatttannnnnnnnnnnn |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32533019 |
ggaggaaacatgctcccttgataatttttgaattgttgctggtccatcttattgctttcctagaagaccaaactcatcaccccatttgttttttattttt |
32532920 |
T |
|
| Q |
219 |
nnacaattgtagctatggaatagttaaagacagacatgctaggagcaaagtgaagaagttaagcccaggagctttgatggtggtgagtgttcaaaaatac |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
32532919 |
ttactattgtagctatggaatagttaaagacagacatgctaggagcaaagtggagaagt------caggagctttgatgacggtgagtgttcaaaaatac |
32532826 |
T |
|
| Q |
319 |
aattttatgaatggatatcaacatttataattcatagtaagatgtttgaataaatgacatgtttttcagtctttctagcgttttgcatttattgttgttg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32532825 |
aattttatgaatggatatcaacatttataattcatagtaagatgtttgaataaattacatgtttttcagtctttctagcgttttgtatttattgttgttg |
32532726 |
T |
|
| Q |
419 |
caacatggagtaaaatttcataatctcggttggttcgaaccgaaggagtggcgagaagtgatacgattaaatgcttttggtatgtatagatgaattccct |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532725 |
caacatggagtaaactttcataatctcggttggttcgaaccgaaggagtggcgagaagtgatacgattaaatgcttttggtatgtatagatgaattccct |
32532626 |
T |
|
| Q |
519 |
gatgaaaattgttgcttgaatattgtgtaaggatggaactaacatacatcactactatcttatctgtgtgcata |
592 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532625 |
gatgaaaattgttgcttgaatatcgtgtaaggatggaactaacatacatcactactatcttatctgtgtgcata |
32532552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1332 - 1629
Target Start/End: Complemental strand, 32531827 - 32531530
Alignment:
| Q |
1332 |
ttggtaacaatttcgtcaaaaatttaaaattcacgtgacctagctcattacctctatcattatcatcaacatcttagttagaggtataaaatcatttatg |
1431 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32531827 |
ttggtaacaagttcgtcaaaaatttaaaattcacgtgacctagctcattacctctatcattatcatcaacatcttagttagaggtataaaatcatttatg |
32531728 |
T |
|
| Q |
1432 |
gtccatgagatggtatttgagcctttgatactagagtggttggtgatctgtgttgctctgactcttacaataaaaatgattgtattttatcgtaacatga |
1531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32531727 |
gtccatgagatggtatttgagcctttgatactagagtggttggtgatctgtgttgctctgactcttacaataaaaatgattgtattttatcgtaacatga |
32531628 |
T |
|
| Q |
1532 |
gaagtctagcaactggagtgcaatgtgtgtagaattattgtgacaaataatgacaaacgaagaataaatgaatgtggattcgttttgtctgttgcttc |
1629 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32531627 |
gaagtctagctactggagtgcaatgtgtgtagaattattgcgacaaataatgacaaacgatgaataaatgaatgtggattcgttttgtctgttgcttc |
32531530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-50
Query Start/End: Original strand, 1234 - 1336
Target Start/End: Complemental strand, 32532005 - 32531903
Alignment:
| Q |
1234 |
tacaacacagtggatccttcattcaatttctgctaaacgttacagaatttatttgtcattttattgtcatatgactaaaacacatgtcatagtatgaatt |
1333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32532005 |
tacaacacagtggatccttcattcaatttctgctaaacgttacagaatttatttgtcattttattgtcatatgactaaaacacatgtcatagtatgaatt |
32531906 |
T |
|
| Q |
1334 |
ggt |
1336 |
Q |
| |
|
||| |
|
|
| T |
32531905 |
ggt |
32531903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 902 - 1139
Target Start/End: Complemental strand, 32520486 - 32520256
Alignment:
| Q |
902 |
ctgtggttatattcatcatttataccaattgcgaacctgccatgatgttattttatctgtataatcgaatatcagatgcatttagaaccataaagaggga |
1001 |
Q |
| |
|
||||||||||||| |||| | ||||||||||| |||| ||||||| | ||||||||||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
32520486 |
ctgtggttatatttatcaat-ataccaattgctaaccagccatgacatatttttatctgtaaaataaaatatcagatgcatttaggaccataaagaggga |
32520388 |
T |
|
| Q |
1002 |
agaaggattcagtgcattttacagaggaattgttcctggnnnnnnnctggtatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaata |
1101 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||| |||||| | | |||| |
|
|
| T |
32520387 |
agaaggatttagtgcactttacagagggattgttcctgg------tctggtatgttgctggctcttgttatttttcctgtcaatcttaacactgaaaatt |
32520294 |
T |
|
| Q |
1102 |
ttaatggaagattacatgtaatatgtggaattgtgcat |
1139 |
Q |
| |
|
||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
32520293 |
ataacggaagattatatataatatgtggaattgtgcat |
32520256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 6e-41
Query Start/End: Original strand, 569 - 857
Target Start/End: Complemental strand, 32548072 - 32547782
Alignment:
| Q |
569 |
actactatcttatctgtgtgcatatatttgagatatttcttagctttcaaagttggatgtttagggatccaaaaccaaccaatcatactgtggcacattc |
668 |
Q |
| |
|
|||||| |||||||| || ||| ||||| ||||||| ||||||||| | |||||||||| |||| || ||||||||||| | |||||||||| |||||| |
|
|
| T |
32548072 |
actactttcttatctatgcacatctatttaagatattgcttagctttaatagttggatgtgtaggaatgcaaaaccaaccgaacatactgtggtacattc |
32547973 |
T |
|
| Q |
669 |
atgaatg-tggca-gaactgaatttacaatcattttggtttccttcacctgttgtcaggtttgcttgtgcgcaaatcctgcttttgtagtgaagacaagg |
766 |
Q |
| |
|
|||||| || || || |||| | |||||||||| |||||||||||| ||||||||||| ||||| | ||||||||| || ||||||||||||| |
|
|
| T |
32547972 |
ctgaatggtgtcaagatatgaacctgcaatcattttaatttccttcacctattgtcaggtttccttgttcacaaatcctgtttggctagtgaagacaaga |
32547873 |
T |
|
| Q |
767 |
ttgcagcttcagacgcctcttcttcatgcacggccatattctgggctatatggtctgaactccatcttacattagctatatattttgaact |
857 |
Q |
| |
|
|| ||||||||||| ||| ||| ||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||| |||||| |
|
|
| T |
32547872 |
ttacagcttcagactcctattcatcagacacggccatactctgggctatatggtgtgctctccatcttacactatctttatattatgaact |
32547782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 520 - 622
Target Start/End: Complemental strand, 32520950 - 32520848
Alignment:
| Q |
520 |
atgaaaattgttgcttgaatattgtgtaaggatggaactaacatacatcactactatcttatctgtgtgcatatatttgagatatttcttagctttcaaa |
619 |
Q |
| |
|
|||||||||||||||||| |||| | | |||||||||||||||||| | |||||| |||||||| ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
32520950 |
atgaaaattgttgcttgagtattatttgaggatggaactaacatactttactactttcttatctatgtgcatatgtttgggatattgcttagctttcaaa |
32520851 |
T |
|
| Q |
620 |
gtt |
622 |
Q |
| |
|
||| |
|
|
| T |
32520850 |
gtt |
32520848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 930 - 1040
Target Start/End: Complemental strand, 32547162 - 32547052
Alignment:
| Q |
930 |
ttgcgaacctgccatgatgttattttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagagga |
1029 |
Q |
| |
|
|||| |||| ||||||| || ||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
32547162 |
ttgctaaccagccatgacatttttttatctgtaaaataaaatatcagatgcatttaggaccataatgagggaagaaggatttagtgcactttacagaggg |
32547063 |
T |
|
| Q |
1030 |
attgttcctgg |
1040 |
Q |
| |
|
||||||||||| |
|
|
| T |
32547062 |
attgttcctgg |
32547052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 752 - 857
Target Start/End: Complemental strand, 32520753 - 32520648
Alignment:
| Q |
752 |
gtagtgaagacaaggttgcagcttcagacgcctcttcttcatgcacggccatattctgggctatatggtctgaactccatcttacattagctatatattt |
851 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||| ||| ||||||||||| |||||| ||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
32520753 |
gtagtgaagacaagattgcagcttcagacaccgcttcatcaggcacggccatactctgggatatatggtctgctctccatcttaaattaactatatattc |
32520654 |
T |
|
| Q |
852 |
tgaact |
857 |
Q |
| |
|
|||||| |
|
|
| T |
32520653 |
tgaact |
32520648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 32521442 - 32521294
Alignment:
| Q |
299 |
tggtgagtgttcaaaaatacaattttatgaatggatatcaacatttataattcatagtaagatgtttga-ataaatgacatgtttttcagtctttctagc |
397 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||| ||| || | ||||| |||| || | || | |
|
|
| T |
32521442 |
tggtgagtgttctaaaatacaatattacgaaaggatatcaacatttataattcatagtaagatatttgggatagattatatgttgttcaatcctgcttga |
32521343 |
T |
|
| Q |
398 |
gttttgcattta-ttgttgttgcaacatggagtaaaatttcataatctc |
445 |
Q |
| |
|
|||||| ||||| || |||||||||| |||||| || |||||||||||| |
|
|
| T |
32521342 |
gttttgtatttactttttgttgcaacttggagtgaagtttcataatctc |
32521294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 32548377 - 32548273
Alignment:
| Q |
299 |
tggtgagtgttcaaaaatacaattttatgaatggatatcaacatttataattcatagtaagatgtttgaataaatgacatgtttttcagtctttctagcg |
398 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||| ||| |||||||||||| |||||| |||| ||| || | ||||| |||| || | ||||| |
|
|
| T |
32548377 |
tggtgagtgttcaaaaatataatattatgaatgggcatccacacttataattcataataagatatttggatagataatatgttgttcaatcatgctagca |
32548278 |
T |
|
| Q |
399 |
ttttg |
403 |
Q |
| |
|
||||| |
|
|
| T |
32548277 |
ttttg |
32548273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-63
Query Start/End: Original strand, 654 - 857
Target Start/End: Complemental strand, 23482751 - 23482549
Alignment:
| Q |
654 |
tactgtggcacattcatgaatgtggcagaactgaatttacaatcattttggtttccttcacctgttgtcaggtttgcttgtgcgcaaatcctgcttttgt |
753 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
23482751 |
tactgtggcaaattcatgaatgtgtcaaaactgaagttacagtcattttggtttccttcagctgttgttaggtttgcttgtgcacaaatcctttttttgt |
23482652 |
T |
|
| Q |
754 |
agtgaagacaaggttgcagcttcagacgcctcttcttcatgcacggccatattctgggctatatggtctgaactccatcttacattagctatatattttg |
853 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||| ||||||||| ||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
23482651 |
agtgaagacaaggttgcagcttgaaac-cctcttcatcatgcacgaccatactctaggctatatggtctgatctccatcttacattggctatatattttg |
23482553 |
T |
|
| Q |
854 |
aact |
857 |
Q |
| |
|
|||| |
|
|
| T |
23482552 |
aact |
23482549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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