View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_13 (Length: 324)
Name: NF14037_low_13
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 12355993 - 12356214
Alignment:
| Q |
19 |
gaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaatatcacttaaatatttacgcactttcgaaatttgaaaatcaaat |
118 |
Q |
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| T |
12355993 |
gaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaacatcacttaaatatttacgcactttcgaaatttgcaaatcaaat |
12356092 |
T |
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| Q |
119 |
tgagatgattagagttatccatgaggaatgtgattacagttttacaaagatcacaagaaccaagcatagtggttatcgaatttgcttttgtggcatcaaa |
218 |
Q |
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| T |
12356093 |
tgagatgattagagttatccatgaggaatgtaattacagttttacaaagatcacaagagccaagcatagtggttatcgaatttgcttttgtggcatcaaa |
12356192 |
T |
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| Q |
219 |
tggcatataagtgtgttgcttg |
240 |
Q |
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| T |
12356193 |
tggcatataagcgtgttgcttg |
12356214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 12395021 - 12395109
Alignment:
| Q |
138 |
catgaggaatgtgattacagttttacaaagatcacaagaaccaagcatagtggttatcgaatttgcttttgtggcatcaaatggcatat |
226 |
Q |
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| T |
12395021 |
catgaggaatgtgattacagctttaccaagttcgcgagaaccaagcatagttgtaatggcatttgcttttgtagcatcaaatggtatat |
12395109 |
T |
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