View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_14 (Length: 318)
Name: NF14037_low_14
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_14 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 29451526 - 29451235
Alignment:
| Q |
10 |
aagaaaattcgcaaagggatttagactcggggcttcaaaggagtaaaatatgatattaggg-acaaaacaaaataataataagagtagacaaaggaacgt |
108 |
Q |
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| T |
29451526 |
aagaaaattcgcaaagggatttggactcggggcttcaaaggagtaaaatatgatattaggggacaaaacaaaataataataagagtagacaaagaaacgt |
29451427 |
T |
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| Q |
109 |
acgatggaataggaaaggtgctacctctaggtgttaaagagaaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatag |
208 |
Q |
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| T |
29451426 |
acgatggaataggaaaggtgctacctctaggtgttagagagaaagagaggacgtgcatagacccaaattgagaaggttgattcttctattccagtcatag |
29451327 |
T |
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| Q |
209 |
tatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggtattagagtgaaagggaataaaagtggggtaat |
300 |
Q |
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| T |
29451326 |
tatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggtattagagtgaaagggaataaaagtggggtaat |
29451235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 298
Target Start/End: Complemental strand, 107566 - 107419
Alignment:
| Q |
150 |
aaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaaa |
249 |
Q |
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| T |
107566 |
aaagagaggacgtgcttgtatccaaaatgagaaggttgatttttctattcaagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaa |
107467 |
T |
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| Q |
250 |
tcatattaaaagatgaggtattagagtgaaagggaataaaagtggggta |
298 |
Q |
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| T |
107466 |
tcatattaagag-tgaggtattagagtgaaaagaaataaaagtgaggta |
107419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 107830 - 107784
Alignment:
| Q |
97 |
acaaaggaacgtacgatggaataggaaaggtgctacctctaggtgtt |
143 |
Q |
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| T |
107830 |
acaaaggaatttacgatagaataggaaaagtgctacctctaggtgtt |
107784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 6308335 - 6308185
Alignment:
| Q |
149 |
gaaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaa |
248 |
Q |
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| T |
6308335 |
gaaagagaggacgtgcttgtacccaaaatgagaaggttgatttttctattcaagtcatagtatggaatcaaggcaatcaattgaatttaagggactt-aa |
6308237 |
T |
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| Q |
249 |
atcatattaaaagatgag--gtattagagtgaaagggaataaaagtggggta |
298 |
Q |
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| T |
6308236 |
atcatattaaaagaggaggtgtattagagtgaaaggaaataagagtgaggta |
6308185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 3280179 - 3280237
Alignment:
| Q |
203 |
tcatagtatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaag |
261 |
Q |
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| T |
3280179 |
tcatagtatgaatttaaggcattcaattgattttaagggatttaaaatcatattaaaag |
3280237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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