View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_16 (Length: 305)
Name: NF14037_low_16
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 5022011 - 5022261
Alignment:
| Q |
33 |
cacatgttgatggctttcttggtgtcagcatactcgaatccattcatgtggccaagaagaaaggggacaaaagaatccaccagcnnnnnnnntcacaccc |
132 |
Q |
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| T |
5022011 |
cacatgttgatggctttcttggtgtcagcatactcgaatccattcatgtggccaagaagaaaggggacaaaagaatccaccagcaaaaaaaatcacaccc |
5022110 |
T |
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| Q |
133 |
tctagtccacgccgcgcactcccaaaagcagcaaaacacggtataatagcaccaacaataattgataggcactcatagtaaaagatggaaaataatccat |
232 |
Q |
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| T |
5022111 |
tctagtccacgccgcgcactcccaaaagcagcaaaacacagtataatagcaccaacaataattgataggcactcatagtaaaagatggaaaataatccat |
5022210 |
T |
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| Q |
233 |
cttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022211 |
cttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtg |
5022261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 23712071 - 23712157
Alignment:
| Q |
33 |
cacatgttgatggctttcttggtgtcagcat-----actcgaatccattcatgtggccaagaagaaaggggacaaaagaatccacca |
114 |
Q |
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| T |
23712071 |
cacatgttgatggctttgttggagtgagcataatcgaatcgaatccattcacgtggccaagaagaaaggggacaaaagaatccacca |
23712157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 23712231 - 23712275
Alignment:
| Q |
188 |
caataattgataggcactcatagtaaaagatggaaaataatccat |
232 |
Q |
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| T |
23712231 |
caataattgatgggcactcatagtaaaatatggaaaataatccat |
23712275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 12438414 - 12438468
Alignment:
| Q |
232 |
tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtat |
286 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
12438414 |
tcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtat |
12438468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 41654637 - 41654583
Alignment:
| Q |
232 |
tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtat |
286 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
41654637 |
tcttccaattgcccatgcattcacaaacacttgtgttccagctggtattgtgtat |
41654583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 41647102 - 41647048
Alignment:
| Q |
232 |
tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtat |
286 |
Q |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
41647102 |
tcttccaattgcccatgaattcacaaacacttgtgttccagctggtattgtgtat |
41647048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 2433572 - 2433518
Alignment:
| Q |
232 |
tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtat |
286 |
Q |
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|||||| ||||||||| ||||||||| ||||||||||| | ||||||||||||| |
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| T |
2433572 |
tcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtat |
2433518 |
T |
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