View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_18 (Length: 288)
Name: NF14037_low_18
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 6910193 - 6910468
Alignment:
| Q |
13 |
aatataagctcaaaattttatctcaccaccaaacatagcctnnnnnnngataatgaaaaaggaaccgagtaccttagtaatggaaatttcatcatcagga |
112 |
Q |
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| T |
6910193 |
aatataagctcaaaattttatctcaccaccaaacatagcctaaaaaaagataatgaaaaaggaaccgagtaccttagtaatggaaatttcatcatcagga |
6910292 |
T |
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| Q |
113 |
acaagtgttctactatcaataggaacatcagaagaagactgagaagcagtagtagttgaagaatcagctgctcttactggaacaaaactaaacctattgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6910293 |
acaagtgttctactatcaataggaacatcagaagaagactgagaagcagtagtagttgaagaatcagcagctcttactggaacaaaactaaacctattgc |
6910392 |
T |
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| Q |
213 |
ttttgaagaaaagcttagcatgaaaacatgaaatggattgaggatgaacagaaacaagtggagactttgtgagttg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6910393 |
ttttgaagaaaagcttagcatgaaaacatgaaatggattgaggatgaacagaaacaagtggagactttgtgagttg |
6910468 |
T |
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