View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14037_low_19 (Length: 288)

Name: NF14037_low_19
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14037_low_19
NF14037_low_19
[»] chr5 (3 HSPs)
chr5 (1-70)||(15202558-15202627)
chr5 (1-225)||(16417081-16417311)
chr5 (111-240)||(13341475-13341605)
[»] chr6 (3 HSPs)
chr6 (88-239)||(33592930-33593081)
chr6 (138-205)||(20432406-20432474)
chr6 (142-209)||(31407561-31407629)
[»] chr3 (3 HSPs)
chr3 (4-182)||(44922209-44922396)
chr3 (139-226)||(27676685-27676773)
chr3 (173-209)||(13006109-13006145)
[»] chr2 (1 HSPs)
chr2 (138-240)||(19245837-19245940)
[»] scaffold0534 (1 HSPs)
scaffold0534 (138-226)||(918-1007)
[»] chr8 (2 HSPs)
chr8 (138-226)||(17566346-17566435)
chr8 (166-226)||(11973957-11974017)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-51)||(220512-220563)
[»] chr7 (1 HSPs)
chr7 (138-240)||(4574978-4575081)
[»] scaffold0150 (1 HSPs)
scaffold0150 (138-197)||(33186-33246)
[»] scaffold0036 (1 HSPs)
scaffold0036 (173-209)||(36945-36981)
[»] chr4 (1 HSPs)
chr4 (162-226)||(22060541-22060605)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15202627 - 15202558
Alignment:
Q  1 gtgttgatatgatggagatgatccatagaattggtgtgtgatttgatgtaaggctttaattttaatgcat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15202627 gtgttgatatgatggagatgatccatagaattggtgtgtgatttgatgtaaggctttaattttaatgcat 15202558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 16417081 - 16417311
Alignment:
Q  1 gtgttgatatgatggag-atgatccatagaattggtg--tgtgatttgatgtaa------ggctttaattttaatgcattttggtaagaatcttttgatt 91  Q
    ||||||||||||||| | |||| ||||||||||||||  ||||| ||||||||       |||||||| |||||  |||||||||| ||| |||| ||||    
T  16417081 gtgttgatatgatgggggatgacccatagaattggtgcatgtgaattgatgtagcatcttggctttaactttaagtcattttggta-gaa-ctttcgatt 16417178  T
Q  92 ttaattgagatcttatgaattttgattttgttatctcgtatagatcctacaaaagtaattaagtaaaattttcgatttcgtttgcgattttataattttc 191  Q
    |  |||| ||| |||||| |||| ||| || ||||||  || |||||||||||  || || |||||||| |||||||||| |||||||||||| |||||     
T  16417179 tcgattgcgattttatgattttttattgtgctatctcaaatcgatcctacaaagttatttgagtaaaatcttcgatttcgattgcgattttatgatttt- 16417277  T
Q  192 aattttgctattccctttaaatatgaagcaaaat 225  Q
     |||||| |||  ||||| ||| |||||||||||    
T  16417278 gattttgttatctcctttcaatttgaagcaaaat 16417311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 13341605 - 13341475
Alignment:
Q  111 ttttgattttgttatctcgtatagatcctacaaaagtaattaagtaaaattttcgatttcgtttgcgattttataatttt-caattttgctattcccttt 209  Q
    ||||||||||| ||||   ||| ||| ||||||||||| |  ||||||   ||| ||||||||||||||||||  ||||| ||||||| |||||||||||    
T  13341605 ttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacgatttttcaatttttctattcccttt 13341506  T
Q  210 aaatatgaagcaaaatctcaagtttgacaac 240  Q
      || |||||||||||| | | |||||||||    
T  13341505 cgatttgaagcaaaatcccgattttgacaac 13341475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 33593081 - 33592930
Alignment:
Q  88 gattttaattgagatcttatgaattttgattttgttatctcgtatagatcctacaaaagtaattaagtaaaattttcgatttcgtttgcgattttataat 187  Q
    |||||| |||| ||| |||||| ||||||||||| ||||   |||  || ||||||||||| || ||||||   |||||||||| |||| ||||||  ||    
T  33593081 gattttgattgcgattttatgatttttgattttgctatcctatatcaattctacaaaagtagttgagtaaatcattcgatttcgattgcaattttacgat 33592982  T
Q  188 tttcaattttgctattccctttaaatatgaagcaaaatctcaagtttgacaa 239  Q
    ||||||||||| ||||||||||  ||||||||||||||| | | ||||||||    
T  33592981 tttcaattttgttattccctttcgatatgaagcaaaatcccgattttgacaa 33592930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 20432474 - 20432406
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaattttgctattcc 205  Q
    |||||||| || |||||||||||| ||| |||| | |||||||||||  |||||| |||||||||||||    
T  20432474 ctacaaaactagttaagtaaaattcttcaattttgattgcgattttacgattttcgattttgctattcc 20432406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 31407561 - 31407629
Alignment:
Q  142 aaaagtaattaagtaaaat-tttcgatttcgtttgcgattttataattttcaattttgctattcccttt 209  Q
    ||||||| || |||||||| ||| ||||| | ||| ||||||||||||||| |||||| ||||||||||    
T  31407561 aaaagtagttgagtaaaatcttttgattttgattgtgattttataattttcgattttgttattcccttt 31407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 44922209 - 44922396
Alignment:
Q  4 ttgatatgat-ggagatgatccatagaattg--gtgtgtgatttgatgta------aggctttaattttaatgcattttggtaagaatcttttgatttta 94  Q
    |||||||||| || |||||||||||||||||  |||||||||||||| ||      ||||||||| |||||   ||||||||| |||||||| ||||||     
T  44922209 ttgatatgataggggatgatccatagaattgttgtgtgtgatttgatttagcatataggctttaactttaagatattttggta-gaatctttcgattttg 44922307  T
Q  95 attgagatcttatgaattttgattt-tgttatctcgtatagatcctacaaaagtaattaagtaaaattttcgatttcgtttgcgatttt 182  Q
    |||| ||| ||| |  |||| | || || |||||| ||| |||||||||||| || || ||||||||||||||||||| ||| ||||||    
T  44922308 attgcgattttacggtttttcaattatgctatctcatatcgatcctacaaaaatagtttagtaaaattttcgatttcgattgtgatttt 44922396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 27676685 - 27676773
Alignment:
Q  139 tacaaaagtaattaagtaaaat-tttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatc 226  Q
    |||||||||| || |||||||| ||||||||| | |||||||||||  |||||| |||||||| ||||||||  |  ||||||||||||    
T  27676685 tacaaaagtagttgagtaaaatctttcgattttgattgcgattttaagattttcgattttgctcttccctttcgacttgaagcaaaatc 27676773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 13006109 - 13006145
Alignment:
Q  173 ttgcgattttataattttcaattttgctattcccttt 209  Q
    |||||||||||  ||||||||||||||||||||||||    
T  13006109 ttgcgattttacgattttcaattttgctattcccttt 13006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 19245837 - 19245940
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatctcaagtttga 236  Q
    ||||||||||| |||||||||||  || ||||| | |||||||||||  |||||  ||||||||||||||||| ||  |||||||||||| | | |||||    
T  19245837 ctacaaaagtagttaagtaaaatccttagattttgattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatcccgattttga 19245936  T
Q  237 caac 240  Q
    ||||    
T  19245937 caac 19245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 918 - 1007
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatc 226  Q
    ||||||||||| || ||||||||| |||||||| | |||| ||||||  ||||||||||||||| ||||||||  |  ||||||||||||    
T  918 ctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctcttcccttttgacctgaagcaaaatc 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 17566346 - 17566435
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatc 226  Q
    ||||||||||| || ||||||||| |||||||| | |||| ||||||  ||||||||||||||| ||||||||  |  ||||||||||||    
T  17566346 ctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgattttcaattttgctcttcccttttgacctgaagcaaaatc 17566435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 11974017 - 11973957
Alignment:
Q  166 atttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatc 226  Q
    |||||| |||||||||||| |||||| |||||||||||| |||| ||| ||| ||||||||    
T  11974017 atttcgattgcgattttatgattttcgattttgctattctctttcaatctgatgcaaaatc 11973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 220563 - 220512
Alignment:
Q  2 tgttgatatgatggagatgatccatagaattg--gtgtgtgatttgatgtaa 51  Q
    |||||||||||||| ||||||||||| |||||  ||||||||||||||||||    
T  220563 tgttgatatgatggggatgatccatataattgatgtgtgtgatttgatgtaa 220512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 4574978 - 4575081
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatctcaagtttga 236  Q
    ||||||||||| || |||| |||| || ||||| | |||||||||||  |||||  ||||| ||||||||||| ||  ||||| |||||||||| |||||    
T  4574978 ctacaaaagtagttgagtagaattctttgattttgattgcgattttacgatttttgattttactattccctttcaacctgaagaaaaatctcaattttga 4575077  T
Q  237 caac 240  Q
    ||||    
T  4575078 caac 4575081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 33186 - 33246
Alignment:
Q  138 ctacaaaagtaattaagtaaaatt-ttcgatttcgtttgcgattttataattttcaatttt 197  Q
    |||||||||||| | ||||||||| |||||||| | ||||||||||| ||||||| |||||    
T  33186 ctacaaaagtaagtgagtaaaattcttcgattttgattgcgattttacaattttcgatttt 33246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 36981 - 36945
Alignment:
Q  173 ttgcgattttataattttcaattttgctattcccttt 209  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  36981 ttgcaattttataattttcaattttgttattcccttt 36945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 22060605 - 22060541
Alignment:
Q  162 ttcgatttcgtttgcgattttataattttcaattttgctattccctttaaatatgaagcaaaatc 226  Q
    |||||||||| ||| |||||||||||| |  ||||||||||||||||| ||| | || |||||||    
T  22060605 ttcgatttcgattgtgattttataattattgattttgctattccctttcaatctaaaacaaaatc 22060541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University