View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14037_low_2 (Length: 1259)
Name: NF14037_low_2
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_2 |
 | |
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| [»] scaffold0189 (2 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 813; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 18 - 1245
Target Start/End: Original strand, 14695305 - 14696525
Alignment:
| Q |
18 |
gtgtggaaggtgtgtcgacggcgtatcggagtgtgtcggcgacatatcaaaaatttaaaattgaatcatcatgagatgtatctgagacgtgagaggtgtg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||| |
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|
| T |
14695305 |
gtgtggaaggtgtgtcaacggcgtatcggagcgtgtcggcgacatatcaaaaacttaaaattgaatcgtcatgagatgtatctaaggcgtgagaggtgtg |
14695404 |
T |
|
| Q |
118 |
tcgacgaggtatcacagtgtcagcgacgtatcagaannnnnnnnnnnnnnnnnnnaattnnnnnnnttccgacacttcttcgatacatatggatggtgta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
14695405 |
tcgacgaggtatcacagtgtcagcgacgtatcagaattttttattttatttttttaattaaaaaaattccgacacttcttcgatacttatggatggtgta |
14695504 |
T |
|
| Q |
218 |
tcaaagcatatcgacgcatcggtacatattagatacaatttgatgaccatttaaacgtatctatgcttcataagttgtaacactgtaaactctaattaat |
317 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14695505 |
tcaaagcatctctacgcatcagtacatattagatacaatttgatgaccatttaaacgtatatatgcttcataagttgtaacactataaactctaattaat |
14695604 |
T |
|
| Q |
318 |
tcactgccaataagatggaactacaattgctttacggttgaagatgtggcgtaattgaacaaacttttgttaccaaacatcatannnnnnnnnnnnnnnn |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14695605 |
tcactgccaataagttggaactacaattgctttacggttgaagatgtggcgtaattgaacaaacttttgttaccaaagatcat----gtttttttttttt |
14695700 |
T |
|
| Q |
418 |
ngccttaccatgtcttttatcttttgttaaatattgttgttctaacaccatagataatagcaggttgttaactcgtcaaatggagttgttggtgggttct |
517 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14695701 |
tgctttaccatgtcttttatcttttgttacatattgttgttctaacaccctagataatagcgggttgttaactcgtcaaatggagttgttggtgggttct |
14695800 |
T |
|
| Q |
518 |
ttatactcttagtcactgaactgtgtagtccaatgatacaccctaattattttagagtgnnnnnnn-ggcattcttcgagtaagtgctaactcctagaga |
616 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
14695801 |
ttatactcttagtaactgaactgtgtagtccaatgatacaccttaattattttagagtgaagaaaaaggcactcttcgagtgagtgctaactcctagaga |
14695900 |
T |
|
| Q |
617 |
gaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaaccttgnnnnnnnnn |
716 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14695901 |
gaaaatagatgaagaaaatggcactctttaagtgagtgtaaactcctatagaggaaatagatgagaaattagggaagaaagtgaaaccttgttttttttt |
14696000 |
T |
|
| Q |
717 |
nnnnnnnnnggaaggaagaaagtgaaaacttgttattattcgacatatcagaattggttccccttacaacatatatcattactattggcacaacaacttg |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
14696001 |
ttttttt---gaaggaagaaagtgaaaacttgttattattcgacatatcagaattggttccccttacatcatatatcattactcttggcacaacaacttg |
14696097 |
T |
|
| Q |
817 |
cattaatctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaag |
916 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
14696098 |
cat-aatctaaagaaaagaaaataacagaatcttaaatttaggaaagaaaataaaccaaactataaaattaggaaagggaattaactaaatgtaatcaag |
14696196 |
T |
|
| Q |
917 |
tgtaactcttctttctcacaaaatctctcgtctaactaggtgtatcatccaacatgtcgtaacaaatcaccctcaccatgtcattgcttgcaattgaagt |
1016 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14696197 |
tgtaactcttctttctcaaaaaatctctcgtctaactaggtgtatcatccaacatgtggtaacaaatcaccctcaccatgtcattgcttgaaattgaagt |
14696296 |
T |
|
| Q |
1017 |
aatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaatttgttcttgaccgagcagtagattaaggctcatttacataggc |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14696297 |
aatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaatttgttctggaccgagcagtagattaaggctcatttacataggc |
14696396 |
T |
|
| Q |
1117 |
ccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctccccataggagggtgttcatagcacttcgggacccattcaaacc |
1216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
14696397 |
ccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctccccgcaggagggtgttaatagcacttcgggccccattcaaatc |
14696496 |
T |
|
| Q |
1217 |
gaatggagaacgtctcccaaatatgccta |
1245 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
14696497 |
gaatggagaacgtctcccaaacatgccta |
14696525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 72; Significance: 4e-32; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 584 - 702
Target Start/End: Complemental strand, 10680 - 10561
Alignment:
| Q |
584 |
ggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactccta-tagagaaaatagatgaga |
682 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
10680 |
ggcactcttcgagtgagtgtaaactcctagagagaaaagagatgaagaaaatggcactcttcgagtaagtgtaaactcctaggagagaaaatagatgaga |
10581 |
T |
|
| Q |
683 |
aattagggaagaaagtgaaa |
702 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
10580 |
aattaggggagaaagtgaaa |
10561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 584 - 680
Target Start/End: Complemental strand, 10732 - 10636
Alignment:
| Q |
584 |
ggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatga |
680 |
Q |
| |
|
|||| ||||||||| |||| |||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10732 |
ggcactcttcgagtgagtgttaactcatggagagaaaagagatgaagaaaatggcactcttcgagtgagtgtaaactcctagagagaaaagagatga |
10636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 589 - 707
Target Start/End: Complemental strand, 35401153 - 35401035
Alignment:
| Q |
589 |
tcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattag |
688 |
Q |
| |
|
||||||||| |||| |||||||| |||| || |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
35401153 |
tcttcgagtgagtgtcaactcctactgagacaagagatgaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattat |
35401054 |
T |
|
| Q |
689 |
ggaagaaagtgaaaccttg |
707 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35401053 |
ggaagaaagtgaaaccttg |
35401035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 639 - 705
Target Start/End: Complemental strand, 38832895 - 38832829
Alignment:
| Q |
639 |
actcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaacct |
705 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||| || |||||||| | |||||||||||||||| |
|
|
| T |
38832895 |
actcttcgagtgagtgtcaaatcctatagaaaaacgtgaagagaaattggagaagaaagtgaaacct |
38832829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 549 - 703
Target Start/End: Complemental strand, 994108 - 993954
Alignment:
| Q |
549 |
aatgatacaccctaattattttagagtgnnnnnnnggcattcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgag |
648 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||| |||| |||| |||||||| ||||||| | ||||||| |||||| ||||||||| |
|
|
| T |
994108 |
aatgatacaccctaattatcttagagtgaagaaaaagcactctttgagtgagtgttaactccttgagagaacagagatgaaaaaaatggcactcttcgaa |
994009 |
T |
|
| Q |
649 |
tgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaac |
703 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
994008 |
tgcgtgtaaactcctagagagaaatcagatgagaaattaaggaagaaagtgaaac |
993954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 728 - 917
Target Start/End: Original strand, 27758224 - 27758413
Alignment:
| Q |
728 |
aaggaagaaagtgaaaacttgttattattcgacatatcagaattggttcccc-ttacaacatatatcattactattggcacaacaacttgcattaatcta |
826 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||| |||||||||| | ||||| ||||||| | | | || ||| |||||||||||| |||||| |
|
|
| T |
27758224 |
aaggaagaaagtgaaaccttattattattcaacatatctgaattggttcactattacatcatatatagtcaatcttagcataacaacttgcat-aatcta |
27758322 |
T |
|
| Q |
827 |
aggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagt |
917 |
Q |
| |
|
|| ||| | ||||||| |||| |||||||| ||||||||||||| |||| |||||||||| ||| |||| ||||| || |||| ||||| |
|
|
| T |
27758323 |
agaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagt |
27758413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 589 - 706
Target Start/End: Original strand, 27758127 - 27758243
Alignment:
| Q |
589 |
tcttcgagtaagtgctaactcctagagagaaaatagatgaagaaaatgagactcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattag |
688 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||||||| | | ||| ||||||||| |||||||| || ||||||||||||||| |||||| |
|
|
| T |
27758127 |
tcttcgagtgagtgtcgactcctagagagaaaagagatgaagaaa-taacacttttcgagtgaatgtaaacttttagagagaaaatagatgacaaattaa |
27758225 |
T |
|
| Q |
689 |
ggaagaaagtgaaacctt |
706 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27758226 |
ggaagaaagtgaaacctt |
27758243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 48473981 - 48473913
Alignment:
| Q |
639 |
actcttcgagtgagtgtaaactcctatagagaaaatagatgagaaattagggaagaaagtgaaaccttg |
707 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||| ||||| |||||||||||||| ||||| |
|
|
| T |
48473981 |
actcttcgagtgagtgtcgactcctagagagaaaagagatgaaaaattggggaagaaagtgaacccttg |
48473913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 824 - 902
Target Start/End: Original strand, 28984025 - 28984103
Alignment:
| Q |
824 |
ctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaac |
902 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| || |||||||||||||| ||| ||||||||| |||||||| |||| |
|
|
| T |
28984025 |
ctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataac |
28984103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 670 - 703
Target Start/End: Original strand, 28983195 - 28983228
Alignment:
| Q |
670 |
aaaatagatgagaaattagggaagaaagtgaaac |
703 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
28983195 |
aaaatagatgagaaattaggggagaaagtgaaac |
28983228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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