View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_22 (Length: 271)
Name: NF14037_low_22
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_22 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 22470124 - 22469877
Alignment:
| Q |
11 |
ggagcagagacatgatattttgaacctagttaggcaacattgtcctatggttgtttgttttcatgagactaagttggagtttatggnnnnnnntttgtac |
110 |
Q |
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| T |
22470124 |
ggagaagagacatgatattttgaacctagttaggcaacactgtcctatggtagtttgttttcatgagactaagttggagtttatggaaatttttttgtgc |
22470025 |
T |
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| Q |
111 |
ttctttgtggggttctaaggagtttggattttctttttggccttcagtgggcacttctggtggtatcctaaccttatggaatgcctcaaaagtagaggtt |
210 |
Q |
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| T |
22470024 |
ttctttgtggggttctaaggagtttggattttctttttggccttcggtgggggcttctggtggtatcctaaccttatggaatgcctcaaatgtagaggtt |
22469925 |
T |
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| Q |
211 |
tagtttactaagagtatgcttaatgagctgattattaaaggaagattt |
258 |
Q |
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| T |
22469924 |
tagtttactaagagtatgtttaatgagctgattattaaaggaagattt |
22469877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 248
Target Start/End: Original strand, 11967 - 12104
Alignment:
| Q |
111 |
ttctttgtggggttctaaggagtttggattttctttttggccttcagtgggcacttctggtggtatcctaaccttatggaatgcctcaaaagtagaggtt |
210 |
Q |
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| T |
11967 |
ttctttgtggggttctaaagagtttggattttcttttcggccttcaatgggcgcttctggtggtatcatgaccttatgggatgcctcggaaattgacgtt |
12066 |
T |
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| Q |
211 |
tagtttactaagagtatgcttaatgagctgattattaa |
248 |
Q |
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| T |
12067 |
tagcttattaagactatgcttaatgtgttgaatattaa |
12104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 11874 - 11945
Alignment:
| Q |
23 |
tgatattttgaacctagttaggcaacattgtcctatggttgtttgttttcatgagactaagttggagtttat |
94 |
Q |
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| T |
11874 |
tgatattttgaagttggttaggcaacattttcgtatggttgtgtgttttcaagatactaagcgggagtttat |
11945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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